U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from GEO Profiles

    • Showing Current items.

    DFL2 Auxin-responsive GH3 family protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 827938, updated on 18-Sep-2024

    Summary

    Go to the top of the page Help
    Official Symbol
    DFL2
    Official Full Name
    Auxin-responsive GH3 family protein
    Primary source
    TAIR:AT4G03400
    Locus tag
    AT4G03400
    See related
    Araport:AT4G03400
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    DWARF IN LIGHT 2; F9H3.1; GH3-10
    Summary
    Encodes a GH3-related gene involved in red light-specific hypocotyl elongation. Analysis of sense and antisense transgenic plants suggests that DFL2 is located downstream of red light signal transduction and determines the degree of hypocotyl elongation.
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    See DFL2 in Genome Data Viewer
    Location:
    chromosome: 4
    Exon count:
    6
    Sequence:
    Chromosome: 4; NC_003075.7 (1497536..1501599, complement)

    Chromosome 4 - NC_003075.7Genomic Context describing neighboring genes Neighboring gene STRUBBELIG-receptor family 3 Neighboring gene ncRNA Neighboring gene Peroxisomal membrane 22 kDa (Mpv17/PMP22) family protein Neighboring gene tRNA-Gln Neighboring gene Protein phosphatase 2C family protein

    Genomic regions, transcripts, and products

    Go to the top of the page Help
    Genomic Sequence:
    NC_003075.7

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

    Go to the top of the pageHelp

    Related articles in PubMed

    1. DFL2, a new member of the Arabidopsis GH3 gene family, is involved in red light-specific hypocotyl elongation. Takase T, et al. Plant Cell Physiol, 2003 Oct. PMID 14581632
    2. Sorting signals, N-terminal modifications and abundance of the chloroplast proteome. Zybailov B, et al. PLoS One, 2008 Apr 23. PMID 18431481, Free PMC Article
    3. Evidence for network evolution in an Arabidopsis interactome map. Arabidopsis Interactome Mapping Consortium. Science, 2011 Jul 29. PMID 21798944, Free PMC Article
    4. Sequence and analysis of chromosome 4 of the plant Arabidopsis thaliana. Mayer K, et al. Nature, 1999 Dec 16. PMID 10617198

    GeneRIFs: Gene References Into Functions

    Pathways from PubChem

    Go to the top of the page

    Interactions

    Go to the top of the page Help
    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

    Go to the top of the page Help
    NM_001340446.1
    NM_116578.3

    Gene Ontology Provided by TAIR

    Process Evidence Code Pubs
    NOT involved_in response to auxin IEP
    Inferred from Expression Pattern
    more info
    		 PubMed 
    acts_upstream_of_or_within response to light stimulus IEP
    Inferred from Expression Pattern
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in chloroplast HDA PubMed 
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

    Go to the top of the page Help
    Preferred Names
    Auxin-responsive GH3 family protein
    NP_001319858.1
    • DWARF IN LIGHT 2 (DFL2); INVOLVED IN: response to auxin stimulus, response to light stimulus; LOCATED IN: chloroplast; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: GH3 auxin-responsive promoter (InterPro:IPR004993); BEST Arabidopsis thaliana protein match is: Auxin-responsive GH3 family protein (TAIR:AT2G46370.4); Has 1425 Blast hits to 1352 proteins in 234 species: Archae - 0; Bacteria - 486; Metazoa - 52; Fungi - 2; Plants - 663; Viruses - 0; Other Eukaryotes - 222 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003075.7 Reference assembly

      Range
      1497536..1501599 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001340446.1 → NP_001319858.1  Auxin-responsive GH3 family protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      E0Y432, Q9ZNS2
      UniProtKB/TrEMBL
      A0A178UXE0, A0A5S9XQB8
      Conserved Domains (1) summary
      pfam03321
      Location:14 → 571
      GH3; GH3 auxin-responsive promoter

    2. NM_116578.3 → NP_192249.1  Auxin-responsive GH3 family protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_192249.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      E0Y432, Q9ZNS2
      UniProtKB/TrEMBL
      A0A178UXE0, A0A5S9XQB8
      Conserved Domains (1) summary
      pfam03321
      Location:14 → 571
      GH3; GH3 auxin-responsive promoter
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q9ZNS2.1

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.