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    transmembrane protein (DUF616) [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 826549, updated on 18-Sep-2024

    Summary

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    Official Full Name
    transmembrane protein (DUF616)
    Primary source
    TAIR:AT4G09630
    Locus tag
    AT4G09630
    See related
    Araport:AT4G09630
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    T25P22.70; T25P22_70
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    Genomic context

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    Location:
    chromosome: 4
    Exon count:
    7
    Sequence:
    Chromosome: 4; NC_003075.7 (6083585..6088134)

    Chromosome 4 - NC_003075.7Genomic Context describing neighboring genes Neighboring gene Mitochondrial transcription termination factor family protein Neighboring gene pseudo Neighboring gene magnesium transporter, putative (DUF803) Neighboring gene ncRNA Neighboring gene miscRNA

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003075.7

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Putative glycosyltransferases and other plant Golgi apparatus proteins are revealed by LOPIT proteomics. Nikolovski N, et al. Plant Physiol, 2012 Oct. PMID 22923678, Free PMC Article
    2. Sequence and analysis of chromosome 4 of the plant Arabidopsis thaliana. Mayer K, et al. Nature, 1999 Dec 16. PMID 10617198

    GeneRIFs: Gene References Into Functions

    General gene information

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    NM_001340627.1
    NM_117031.3

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables glycosyltransferase activity ISM
    Inferred from Sequence Model
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    transmembrane protein (DUF616)
    NP_192701.1
    • Protein of unknown function (DUF616); CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF616 (InterPro:IPR006852); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF616) (TAIR:AT1G34550.1); Has 3181 Blast hits to 2512 proteins in 288 species: Archae - 26; Bacteria - 157; Metazoa - 687; Fungi - 206; Plants - 314; Viruses - 69; Other Eukaryotes - 1722 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003075.7 Reference assembly

      Range
      6083585..6088134
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_117031.3 → NP_192701.1  transmembrane protein (DUF616) [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_192701.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178URS7, A0A5S9XQR6, Q9SST1
      Conserved Domains (1) summary
      pfam04765
      Location:388 → 696
      DUF616; Protein of unknown function (DUF616)

    2. NM_001340627.1 → NP_001328159.1  transmembrane protein (DUF616) [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A1P8B3Q2, A0A5S9XQR6
    Nucleotide Protein
    Heading Accession and Version

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