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    MEE56 Heavy metal transport/detoxification superfamily protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 826969, updated on 18-Sep-2024

    Summary

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    Official Symbol
    MEE56
    Official Full Name
    Heavy metal transport/detoxification superfamily protein
    Primary source
    TAIR:AT4G13380
    Locus tag
    AT4G13380
    See related
    Araport:AT4G13380
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    maternal effect embryo arrest 56; T9E8.120; T9E8_120
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    Genomic context

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    See MEE56 in Genome Data Viewer
    Location:
    chromosome: 4
    Exon count:
    3
    Sequence:
    Chromosome: 4; NC_003075.7 (7781782..7782553)

    Chromosome 4 - NC_003075.7Genomic Context describing neighboring genes Neighboring gene Serinc-domain containing serine and sphingolipid biosynthesis protein Neighboring gene NSP (nuclear shuttle protein)-interacting GTPase Neighboring gene ATP-dependent caseinolytic (Clp) protease/crotonase family protein Neighboring gene serine/arginine repetitive matrix protein, putative (DUF936) Neighboring gene Proline-rich extensin-like family protein Neighboring gene ROTUNDIFOLIA like 12

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003075.7

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Genetic and molecular identification of genes required for female gametophyte development and function in Arabidopsis. Pagnussat GC, et al. Development, 2005 Feb. PMID 15634699
    2. Sequence and analysis of chromosome 4 of the plant Arabidopsis thaliana. Mayer K, et al. Nature, 1999 Dec 16. PMID 10617198

    GeneRIFs: Gene References Into Functions

    General gene information

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    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Process Evidence Code Pubs
    acts_upstream_of_or_within embryo development ending in seed dormancy IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    Heavy metal transport/detoxification superfamily protein
    NP_193074.1
    • maternal effect embryo arrest 56 (MEE56); FUNCTIONS IN: metal ion binding; INVOLVED IN: embryo development ending in seed dormancy; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Heavy metal transport/detoxification protein (InterPro:IPR006121); BEST Arabidopsis thaliana protein match is: heavy-metal-associated domain-containing protein (TAIR:AT1G57780.1); Has 1906 Blast hits to 1384 proteins in 227 species: Archae - 17; Bacteria - 216; Metazoa - 257; Fungi - 98; Plants - 252; Viruses - 8; Other Eukaryotes - 1058 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003075.7 Reference assembly

      Range
      7781782..7782553
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_117412.1 → NP_193074.1  Heavy metal transport/detoxification superfamily protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_193074.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q9T0K9
      UniProtKB/TrEMBL
      A0A178UXC4, A0A5S9XRW9, A0A654FNU0
      Conserved Domains (1) summary
      pfam00403
      Location:90 → 125
      HMA; Heavy-metal-associated domain
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q9T0K9.1

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