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    IWS2 Transcription elongation factor (TFIIS) family protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 827636, updated on 18-Sep-2024

    Summary

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    Official Symbol
    IWS2
    Official Full Name
    Transcription elongation factor (TFIIS) family protein
    Primary source
    TAIR:AT4G19000
    Locus tag
    AT4G19000
    See related
    Araport:AT4G19000
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    ARABIDOPSIS THALIANA IWS2 (FROM YEAST INTERACTS WITH SPT6); ATIWS2; F13C5.170; F13C5_170
    Summary
    The C-terminal portion of this protein has homology to the C-termini of the IWS1 (Interacts With Spt6) proteins found in yeast and humans.
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    Genomic context

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    See IWS2 in Genome Data Viewer
    Location:
    chromosome: 4
    Exon count:
    8
    Sequence:
    Chromosome: 4; NC_003075.7 (10405137..10407339)

    Chromosome 4 - NC_003075.7Genomic Context describing neighboring genes Neighboring gene AtS40-3 Neighboring gene xyloglucan endotransglucosylase/hydrolase 29 Neighboring gene E2F/DP family winged-helix DNA-binding domain-containing protein Neighboring gene Proteasome component (PCI) domain protein Neighboring gene AMP-dependent synthetase and ligase family protein Neighboring gene chromomethylase 2

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003075.7

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Arabidopsis IWS1 interacts with transcription factor BES1 and is involved in plant steroid hormone brassinosteroid regulated gene expression. Li L, et al. Proc Natl Acad Sci U S A, 2010 Feb 23. PMID 20139304, Free PMC Article
    2. Sequence and analysis of chromosome 4 of the plant Arabidopsis thaliana. Mayer K, et al. Nature, 1999 Dec 16. PMID 10617198

    GeneRIFs: Gene References Into Functions

    General gene information

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    NM_001341312.1

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables protein binding IPI
    Inferred from Physical Interaction
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in brassinosteroid mediated signaling pathway IEA
    Inferred from Electronic Annotation
    more info
    		  
    involved_in regulation of DNA-templated transcription elongation IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    Transcription elongation factor (TFIIS) family protein
    NP_001319989.1
    • IWS2; CONTAINS InterPro DOMAIN/s: Transcription factor IIS, N-terminal (InterPro:IPR017923); BEST Arabidopsis thaliana protein match is: Transcription elongation factor (TFIIS) family protein (TAIR:AT1G32130.2); Has 1027 Blast hits to 954 proteins in 257 species: Archae - 2; Bacteria - 95; Metazoa - 273; Fungi - 174; Plants - 74; Viruses - 5; Other Eukaryotes - 404 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003075.7 Reference assembly

      Range
      10405137..10407339
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001341312.1 → NP_001319989.1  Transcription elongation factor (TFIIS) family protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      O49413
      UniProtKB/TrEMBL
      A0A2H1ZEN0
    Nucleotide Protein
    Heading Accession and Version

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