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    Tetratricopeptide repeat (TPR)-like superfamily protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 823940, updated on 18-Sep-2024

    Summary

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    Official Full Name
    Tetratricopeptide repeat (TPR)-like superfamily protein
    Primary source
    TAIR:AT3G47840
    Locus tag
    AT3G47840
    See related
    Araport:AT3G47840
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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    Genomic context

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    Location:
    chromosome: 3
    Exon count:
    1
    Sequence:
    Chromosome: 3; NC_003074.8 (17651841..17654032)

    Chromosome 3 - NC_003074.8Genomic Context describing neighboring genes Neighboring gene DNA glycosylase superfamily protein Neighboring gene succinate dehydrogenase subunit Neighboring gene uncharacterized protein Neighboring gene tRNA (Ile)-lysidine synthase Neighboring gene chloroplastic lipocalin

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003074.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana. Salanoubat M, et al. Nature, 2000 Dec 14. PMID 11130713

    GeneRIFs: Gene References Into Functions

    General gene information

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    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables RNA binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    Process Evidence Code Pubs
    involved_in RNA modification IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    located_in mitochondrion ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    Tetratricopeptide repeat (TPR)-like superfamily protein
    NP_190368.1
    • Tetratricopeptide repeat (TPR)-like superfamily protein; FUNCTIONS IN: binding; INVOLVED IN: biological_process unknown; EXPRESSED IN: sperm cell; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885), Tetratricopeptide-like helical (InterPro:IPR011990); BEST Arabidopsis thaliana protein match is: Tetratricopeptide repeat (TPR)-like superfamily protein (TAIR:AT3G53360.1); Has 44773 Blast hits to 13700 proteins in 237 species: Archae - 0; Bacteria - 16; Metazoa - 99; Fungi - 72; Plants - 44090; Viruses - 0; Other Eukaryotes - 496 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003074.8 Reference assembly

      Range
      17651841..17654032
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_114654.2 → NP_190368.1  Tetratricopeptide repeat (TPR)-like superfamily protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_190368.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q9STS9
      UniProtKB/TrEMBL
      A0A654FDX8
      Conserved Domains (8) summary
      TIGR00756
      Location:478 → 512
      PPR; pentatricopeptide repeat domain (PPR motif)
      sd00006
      Location:579 → 609
      TPR; TPR repeat [structural motif]
      sd00004
      Location:479 → 506
      PPR; PPR repeat [structural motif]
      pfam01535
      Location:377 → 406
      PPR; PPR repeat
      pfam13041
      Location:476 → 522
      PPR_2; PPR repeat family
      pfam13428
      Location:582 → 623
      TPR_14; Tetratricopeptide repeat
      pfam14559
      Location:592 → 636
      TPR_19; Tetratricopeptide repeat
      cl03252
      Location:551 → 575
      PPR; PPR repeat
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q9STS9.1

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