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    heme binding protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 825410, updated on 18-Sep-2024

    Summary

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    Official Full Name
    heme binding protein
    Primary source
    TAIR:AT3G62370
    Locus tag
    AT3G62370
    See related
    Araport:AT3G62370
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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    Genomic context

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    Location:
    chromosome: 3
    Exon count:
    8
    Sequence:
    Chromosome: 3; NC_003074.8 (23080706..23083528)

    Chromosome 3 - NC_003074.8Genomic Context describing neighboring genes Neighboring gene WRKY family transcription factor Neighboring gene F-box/associated interaction domain protein Neighboring gene Carbohydrate-binding-like fold Neighboring gene F-box/associated interaction domain protein Neighboring gene TRICHOME BIREFRINGENCE-LIKE 6 Neighboring gene cytochrome C oxidase subunit

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003074.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Label-free protein quantification for plant Golgi protein localization and abundance. Nikolovski N, et al. Plant Physiol, 2014 Oct. PMID 25122472, Free PMC Article
    2. Isolation and proteomic characterization of the Arabidopsis Golgi defines functional and novel components involved in plant cell wall biosynthesis. Parsons HT, et al. Plant Physiol, 2012 May. PMID 22430844, Free PMC Article
    3. Putative glycosyltransferases and other plant Golgi apparatus proteins are revealed by LOPIT proteomics. Nikolovski N, et al. Plant Physiol, 2012 Oct. PMID 22923678, Free PMC Article
    4. Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana. Salanoubat M, et al. Nature, 2000 Dec 14. PMID 11130713

    GeneRIFs: Gene References Into Functions

    General gene information

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    NM_116102.5

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables heme binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    located_in Golgi apparatus HDA PubMed 
    located_in endosome HDA PubMed 
    located_in trans-Golgi network HDA PubMed 

    General protein information

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    Preferred Names
    heme binding protein
    NP_191796.1
    • heme binding; FUNCTIONS IN: heme binding; INVOLVED IN: oxidation reduction; LOCATED IN: endomembrane system; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Cytochrome c-552/DMSO reductase-like, haem-binding domain (InterPro:IPR019020); Has 36 Blast hits to 36 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 34; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003074.8 Reference assembly

      Range
      23080706..23083528
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_116102.5 → NP_191796.1  heme binding protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_191796.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178VEV3, A0A654FK15, Q9LZQ3
      Conserved Domains (1) summary
      smart00887
      Location:52 → 294
      EB_dh; Ethylbenzene dehydrogenase
    Nucleotide Protein
    Heading Accession and Version

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