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    SWIB/MDM2, Plus-3 and GYF domain-containing protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 832414, updated on 18-Sep-2024

    Summary

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    Official Full Name
    SWIB/MDM2, Plus-3 and GYF domain-containing protein
    Primary source
    TAIR:AT5G23480
    Locus tag
    AT5G23480
    See related
    Araport:AT5G23480
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    K19M13.11; K19M13_11
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    Genomic context

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    Location:
    chromosome: 5
    Exon count:
    6
    Sequence:
    Chromosome: 5; NC_003076.8 (7915955..7919328)

    Chromosome 5 - NC_003076.8Genomic Context describing neighboring genes Neighboring gene uncharacterized protein Neighboring gene Haloacid dehalogenase-like hydrolase (HAD) superfamily protein Neighboring gene uncharacterized protein Neighboring gene uncharacterized protein Neighboring gene smr (Small MutS Related) domain-containing protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003076.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana. Tabata S, et al. Nature, 2000 Dec 14. PMID 11130714

    GeneRIFs: Gene References Into Functions

    General gene information

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    NM_122255.6

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    SWIB/MDM2, Plus-3 and GYF domain-containing protein
    NP_568434.5
    • SWIB/MDM2 domain;Plus-3;GYF; FUNCTIONS IN: DNA binding; INVOLVED IN: histone modification, transcription initiation; LOCATED IN: nucleus; EXPRESSED IN: 12 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Plus-3 domain, subgroup (InterPro:IPR018144), SWIB/MDM2 domain (InterPro:IPR003121), Plus-3 (InterPro:IPR004343), GYF (InterPro:IPR003169); BEST Arabidopsis thaliana protein match is: SWIB/MDM2 domain;Plus-3;GYF (TAIR:AT5G08430.1); Has 628 Blast hits to 541 proteins in 110 species: Archae - 0; Bacteria - 43; Metazoa - 166; Fungi - 57; Plants - 154; Viruses - 1; Other Eukaryotes - 207 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003076.8 Reference assembly

      Range
      7915955..7919328
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001343805.1 → NP_001329999.1  SWIB/MDM2, Plus-3 and GYF domain-containing protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A1P8B9E3, A0A654G3Z9

    2. NM_001343806.1 → NP_001329998.1  SWIB/MDM2, Plus-3 and GYF domain-containing protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A1P8B9E3, A0A654G3Z9

    3. NM_001343807.1 → NP_001329997.1  SWIB/MDM2, Plus-3 and GYF domain-containing protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A1P8B9E3, A0A654G3Z9

    4. NM_001343808.1 → NP_001329996.1  SWIB/MDM2, Plus-3 and GYF domain-containing protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A1P8B9E3, A0A654G3Z9

    5. NM_001343809.1 → NP_001329995.1  SWIB/MDM2, Plus-3 and GYF domain-containing protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A1P8B9E3, A0A654G3Z9

    6. NM_122255.6 → NP_568434.5  SWIB/MDM2, Plus-3 and GYF domain-containing protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A654G3Z9, F4KCX4
    Nucleotide Protein
    Heading Accession and Version

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