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    hypothetical protein (DUF1216) [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 833984, updated on 18-Sep-2024

    Summary

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    Official Full Name
    hypothetical protein (DUF1216)
    Primary source
    TAIR:AT5G39870
    Locus tag
    AT5G39870
    See related
    Araport:AT5G39870
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    MYH19.6; MYH19_6
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    Genomic context

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    Location:
    chromosome: 5
    Exon count:
    2
    Sequence:
    Chromosome: 5; NC_003076.8 (15968589..15970046, complement)

    Chromosome 5 - NC_003076.8Genomic Context describing neighboring genes Neighboring gene miscRNA Neighboring gene Glutaredoxin family protein Neighboring gene uncharacterized protein Neighboring gene 2-aminoethanethiol dioxygenase, putative (DUF1637)

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003076.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana. Tabata S, et al. Nature, 2000 Dec 14. PMID 11130714

    GeneRIFs: Gene References Into Functions

    General gene information

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    NM_123350.2

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Process Evidence Code Pubs
    involved_in biological_process ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    located_in chloroplast ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    hypothetical protein (DUF1216)
    NP_198803.1
    • Protein of unknown function (DUF1216); LOCATED IN: endomembrane system; EXPRESSED IN: petal, male gametophyte, flower, cultured cell; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1216 (InterPro:IPR009605); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF1216) (TAIR:AT3G28980.1); Has 120 Blast hits to 86 proteins in 18 species: Archae - 2; Bacteria - 5; Metazoa - 4; Fungi - 1; Plants - 88; Viruses - 0; Other Eukaryotes - 20 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003076.8 Reference assembly

      Range
      15968589..15970046 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001344308.1 → NP_001331407.1  hypothetical protein (DUF1216) [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A1P8BDW4, Q9FLE7

    2. NM_123350.2 → NP_198803.1  hypothetical protein (DUF1216) [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_198803.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A5S9YA14, F4KFW1
      Conserved Domains (1) summary
      pfam06746
      Location:73 → 206
      DUF1216; Protein of unknown function (DUF1216)
    Nucleotide Protein
    Heading Accession and Version

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