U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from GEO Profiles

    • Showing Current items.

    LOW PSII ACCUMULATION protein (DUF1995) [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 834937, updated on 18-Sep-2024

    Summary

    Go to the top of the page Help
    Official Full Name
    LOW PSII ACCUMULATION protein (DUF1995)
    Primary source
    TAIR:AT5G48790
    Locus tag
    AT5G48790
    See related
    Araport:AT5G48790
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    K24G6.12; K24G6_12
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    Location:
    chromosome: 5
    Exon count:
    9
    Sequence:
    Chromosome: 5; NC_003076.8 (19779860..19782066, complement)

    Chromosome 5 - NC_003076.8Genomic Context describing neighboring genes Neighboring gene ncRNA Neighboring gene Disease resistance protein (TIR-NBS-LRR class) family Neighboring gene disease resistance protein (TIR-NBS class) Neighboring gene Phototropic-responsive NPH3 family protein Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene cytochrome B5 isoform D

    Genomic regions, transcripts, and products

    Go to the top of the page Help
    Genomic Sequence:
    NC_003076.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

    Go to the top of the pageHelp

    Related articles in PubMed

    1. Sorting signals, N-terminal modifications and abundance of the chloroplast proteome. Zybailov B, et al. PLoS One, 2008 Apr 23. PMID 18431481, Free PMC Article
    2. Global Analysis of Membrane-associated Protein Oligomerization Using Protein Correlation Profiling. McBride Z, et al. Mol Cell Proteomics, 2017 Nov. PMID 28887381, Free PMC Article
    3. Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana. Tabata S, et al. Nature, 2000 Dec 14. PMID 11130714

    GeneRIFs: Gene References Into Functions

    General gene information

    Go to the top of the page Help

    Homology

    NM_001344806.1
    NM_001344807.1
    NM_124256.4

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    located_in chloroplast HDA PubMed 
    located_in chloroplast ISM
    Inferred from Sequence Model
    more info
    		  
    located_in plastid HDA PubMed 

    General protein information

    Go to the top of the page Help
    Preferred Names
    LOW PSII ACCUMULATION protein (DUF1995)
    NP_568702.1
    • FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Domain of unknown function DUF1995 (InterPro:IPR018962); BEST Arabidopsis thaliana protein match is: Low PSII Accumulation 3 (TAIR:AT1G73060.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003076.8 Reference assembly

      Range
      19779860..19782066 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_124256.4 → NP_568702.1  LOW PSII ACCUMULATION protein (DUF1995) [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_568702.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178UIU7, A0A654G9K1, Q94F50
      Conserved Domains (1) summary
      pfam09353
      Location:73 → 305
      DUF1995; Domain of unknown function (DUF1995)

    2. NM_001344806.1 → NP_001332148.1  LOW PSII ACCUMULATION protein (DUF1995) [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      Q9FKB7

    3. NM_001344807.1 → NP_001332149.1  LOW PSII ACCUMULATION protein (DUF1995) [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      Q9FKB7
    Nucleotide Protein
    Heading Accession and Version

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

    Molecular Biology Databases
    Research Materials
    Tools