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    Adenosylmethionine decarboxylase family protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 831452, updated on 18-Sep-2024

    Summary

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    Official Full Name
    Adenosylmethionine decarboxylase family protein
    Primary source
    TAIR:AT5G15950
    Locus tag
    AT5G15950
    See related
    Araport:AT5G15950
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    F1N13.90; F1N13_90
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    Genomic context

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    Location:
    chromosome: 5
    Exon count:
    3
    Sequence:
    Chromosome: 5; NC_003076.8 (5205869..5208036)

    Chromosome 5 - NC_003076.8Genomic Context describing neighboring genes Neighboring gene plant adhesion molecule 1 Neighboring gene NAD(P)-binding Rossmann-fold superfamily protein Neighboring gene stress-responsive protein (KIN1) / stress-induced protein (KIN1) Neighboring gene stress-responsive protein (KIN2) / stress-induced protein (KIN2) / cold-responsive protein (COR6.6) / cold-regulated protein (COR6.6)

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003076.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. An abscisic acid-responsive protein interaction network for sucrose non-fermenting related kinase1 in abiotic stress response. Carianopol CS, et al. Commun Biol, 2020 Mar 26. PMID 32218501, Free PMC Article
    2. Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana. Tabata S, et al. Nature, 2000 Dec 14. PMID 11130714

    GeneRIFs: Gene References Into Functions

    Pathways from PubChem

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    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Miscellaneous features

    • Loc: 5206432-5206587 AT5G15950.uORF1
    NM_001036811.1
    NM_121600.3

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables adenosylmethionine decarboxylase activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    Process Evidence Code Pubs
    involved_in spermine biosynthetic process IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    Adenosylmethionine decarboxylase family protein
    NP_001031888.1
    • Adenosylmethionine decarboxylase family protein; FUNCTIONS IN: adenosylmethionine decarboxylase activity; INVOLVED IN: spermidine biosynthetic process, spermine biosynthetic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: male gametophyte, pollen tube; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage; CONTAINS InterPro DOMAIN/s: S-adenosylmethionine decarboxylase, core (InterPro:IPR016067), S-adenosylmethionine decarboxylase (InterPro:IPR001985), S-adenosylmethionine decarboxylase, conserved site (InterPro:IPR018166), S-adenosylmethionine decarboxylase subgroup (InterPro:IPR018167); BEST Arabidopsis thaliana protein match is: S-adenosylmethionine decarboxylase (TAIR:AT3G02470.4); Has 1032 Blast hits to 1013 proteins in 270 species: Archae - 0; Bacteria - 57; Metazoa - 222; Fungi - 151; Plants - 533; Viruses - 0; Other Eukaryotes - 69 (source: NCBI BLink).
    NP_197099.1
    • Adenosylmethionine decarboxylase family protein; FUNCTIONS IN: adenosylmethionine decarboxylase activity; INVOLVED IN: spermidine biosynthetic process, spermine biosynthetic process, polyamine biosynthetic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: male gametophyte, pollen tube; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage; CONTAINS InterPro DOMAIN/s: S-adenosylmethionine decarboxylase, core (InterPro:IPR016067), S-adenosylmethionine decarboxylase (InterPro:IPR001985), S-adenosylmethionine decarboxylase, conserved site (InterPro:IPR018166), S-adenosylmethionine decarboxylase subgroup (InterPro:IPR018167); BEST Arabidopsis thaliana protein match is: S-adenosylmethionine decarboxylase (TAIR:AT3G02470.4); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003076.8 Reference assembly

      Range
      5205869..5208036
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_121600.3 → NP_197099.1  Adenosylmethionine decarboxylase family protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_197099.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q9S7T9
      UniProtKB/TrEMBL
      A0A178UR54
      Conserved Domains (1) summary
      PLN02524
      Location:1 → 357
      PLN02524; S-adenosylmethionine decarboxylase

    2. NM_001036811.1 → NP_001031888.1  Adenosylmethionine decarboxylase family protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_001031888.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q9S7T9
      UniProtKB/TrEMBL
      A0A178UR54
      Conserved Domains (1) summary
      PLN02524
      Location:1 → 357
      PLN02524; S-adenosylmethionine decarboxylase
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q9S7T9.1

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