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    PAZ domain-containing protein / piwi domain-containing protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 832227, updated on 18-Sep-2024

    Summary

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    Official Full Name
    PAZ domain-containing protein / piwi domain-containing protein
    Primary source
    TAIR:AT5G21030
    Locus tag
    AT5G21030
    See related
    Araport:AT5G21030
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    T10F18.3
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    Genomic context

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    Location:
    chromosome: 5
    Exon count:
    21
    Sequence:
    Chromosome: 5; NC_003076.8 (7139817..7144272, complement)

    Chromosome 5 - NC_003076.8Genomic Context describing neighboring genes Neighboring gene BTB-POZ and MATH domain 5 Neighboring gene uncharacterized protein Neighboring gene F-box protein 2 Neighboring gene hyccin

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003076.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana. Tabata S, et al. Nature, 2000 Dec 14. PMID 11130714

    GeneRIFs: Gene References Into Functions

    General gene information

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    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables RNA binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    located_in cytoplasm ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    PAZ domain-containing protein / piwi domain-containing protein
    NP_197602.2
    • PAZ domain-containing protein / piwi domain-containing protein; FUNCTIONS IN: nucleic acid binding; EXPRESSED IN: egg cell; CONTAINS InterPro DOMAIN/s: Domain of unknown function DUF1785 (InterPro:IPR014811), Stem cell self-renewal protein Piwi (InterPro:IPR003165), Argonaute/Dicer protein, PAZ (InterPro:IPR003100), Polynucleotidyl transferase, ribonuclease H fold (InterPro:IPR012337); BEST Arabidopsis thaliana protein match is: Argonaute family protein (TAIR:AT5G21150.1); Has 1838 Blast hits to 1796 proteins in 202 species: Archae - 2; Bacteria - 0; Metazoa - 963; Fungi - 280; Plants - 458; Viruses - 0; Other Eukaryotes - 135 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003076.8 Reference assembly

      Range
      7139817..7144272 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_122111.3 → NP_197602.2  PAZ domain-containing protein / piwi domain-containing protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_197602.2

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q3E984
      UniProtKB/TrEMBL
      A0A5S9Y605
      Conserved Domains (5) summary
      PLN03202
      Location:1 → 850
      PLN03202; protein argonaute; Provisional
      cd04657
      Location:405 → 805
      Piwi_ago-like; Piwi_ago-like: PIWI domain, Argonaute-like subfamily. Argonaute is the central component of the RNA-induced silencing complex (RISC) and related complexes. The PIWI domain is the C-terminal portion of Argonaute and consists of two subdomains, one of ...
      pfam02170
      Location:261 → 375
      PAZ; PAZ domain
      pfam08699
      Location:195 → 244
      ArgoL1; Argonaute linker 1 domain
      pfam16486
      Location:27 → 183
      ArgoN; N-terminal domain of argonaute

    2. NM_001343695.1 → NP_001331316.1  PAZ domain-containing protein / piwi domain-containing protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A1P8BDI0, A0A5S9Y605
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q3E984.1

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