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    AGP31 arabinogalactan protein 31 [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 839723, updated on 18-Sep-2024

    Summary

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    Official Symbol
    AGP31
    Official Full Name
    arabinogalactan protein 31
    Primary source
    TAIR:AT1G28290
    Locus tag
    AT1G28290
    See related
    Araport:AT1G28290
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    arabinogalactan protein 31; F3H9.6; F3H9_6
    Summary
    Encodes an atypical arabinogalactan protein that is localized to the plasma membrange. AGP31 is highly expressed in flowers and vascular tissue and is repressed by jasmonic acid. AGP31 may play a role in vascular tissue function during defense and development.
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    Genomic context

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    See AGP31 in Genome Data Viewer
    Location:
    chromosome: 1
    Exon count:
    2
    Sequence:
    Chromosome: 1; NC_003070.9 (9889101..9891015, complement)

    Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene ralf-like 4 Neighboring gene VQ motif-containing protein Neighboring gene AP2/B3-like transcriptional factor family protein Neighboring gene Plant self-incompatibility protein S1 family

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003070.9

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Arabinogalactan protein 31 (AGP31), a putative network-forming protein in Arabidopsis thaliana cell walls? Hijazi M, et al. Ann Bot, 2014 Oct. PMID 24685714, Free PMC Article
    2. Characterization of the arabinogalactan protein 31 (AGP31) of Arabidopsis thaliana: new advances on the Hyp-O-glycosylation of the Pro-rich domain. Hijazi M, et al. J Biol Chem, 2012 Mar 16. PMID 22270363, Free PMC Article
    3. A nonclassical arabinogalactan protein gene highly expressed in vascular tissues, AGP31, is transcriptionally repressed by methyl jasmonic acid in Arabidopsis. Liu C, et al. Plant Physiol, 2007 Nov. PMID 17885091, Free PMC Article
    4. An Arabidopsis thaliana arabinogalactan-protein (AGP31) and several cationic AGP fragments catalyse the boron bridging of rhamnogalacturonan-II. Sanhueza D, et al. Biochem J, 2022 Sep 30. PMID 36062804, Free PMC Article
    5. Arabidopsis plasmodesmal proteome. Fernandez-Calvino L, et al. PLoS One, 2011 Apr 20. PMID 21533090, Free PMC Article

    See all (8) citations in PubMed

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?
    1. AGP31 interacts through its PAC domain with galactans that are branches of rhamnogalacturonan I.
      Title: Arabinogalactan protein 31 (AGP31), a putative network-forming protein in Arabidopsis thaliana cell walls?
    2. Most hydroxyproline of the Pro-rich domain in AGP31 is glycosylated.
      Title: Characterization of the arabinogalactan protein 31 (AGP31) of Arabidopsis thaliana: new advances on the Hyp-O-glycosylation of the Pro-rich domain.
    3. AGP31 may be involved in vascular tissue function during both the defense response and development.
      Title: A nonclassical arabinogalactan protein gene highly expressed in vascular tissues, AGP31, is transcriptionally repressed by methyl jasmonic acid in Arabidopsis.
    Submit: New GeneRIF Correction

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    NM_001084147.1
    NM_102594.3

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Process Evidence Code Pubs
    acts_upstream_of_or_within response to jasmonic acid IEP
    Inferred from Expression Pattern
    more info
    		 PubMed 
    acts_upstream_of_or_within rhamnogalacturonan II biosynthetic process IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in extracellular region ISM
    Inferred from Sequence Model
    more info
    		  
    located_in plant-type cell wall IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    located_in plasma membrane IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    located_in plasmodesma HDA PubMed 

    General protein information

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    Preferred Names
    arabinogalactan protein 31
    NP_001077616.1
    • arabinogalactan protein 31 (AGP31); CONTAINS InterPro DOMAIN/s: Pollen Ole e 1 allergen/extensin (InterPro:IPR006041); BEST Arabidopsis thaliana protein match is: arabinogalactan protein 30 (TAIR:AT2G33790.1); Has 103365 Blast hits to 37488 proteins in 2178 species: Archae - 367; Bacteria - 22498; Metazoa - 33534; Fungi - 9734; Plants - 13521; Viruses - 3257; Other Eukaryotes - 20454 (source: NCBI BLink).
    NP_174150.1
    • arabinogalactan protein 31 (AGP31); CONTAINS InterPro DOMAIN/s: Pollen Ole e 1 allergen/extensin (InterPro:IPR006041); BEST Arabidopsis thaliana protein match is: arabinogalactan protein 30 (TAIR:AT2G33790.1); Has 151286 Blast hits to 46459 proteins in 2422 species: Archae - 571; Bacteria - 36421; Metazoa - 49452; Fungi - 15190; Plants - 16901; Viruses - 4924; Other Eukaryotes - 27827 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003070.9 Reference assembly

      Range
      9889101..9891015 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_102594.3 → NP_174150.1  arabinogalactan protein 31 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_174150.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      F4HWJ6, Q0WP47, Q9FZA2
      UniProtKB/TrEMBL
      A0A178WB75, A0A5S9W8T6
      Conserved Domains (1) summary
      pfam01190
      Location:232 → 316
      Pollen_Ole_e_I; Pollen proteins Ole e I like

    2. NM_001084147.1 → NP_001077616.1  arabinogalactan protein 31 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_001077616.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A654EF25
      Conserved Domains (1) summary
      pfam01190
      Location:188 → 272
      Pollen_Ole_e_I; Pollen proteins Ole e I like
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q9FZA2.1

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.