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    SIDL Shal Interactor of Di-Leucine Motif [ Drosophila melanogaster (fruit fly) ]

    Gene ID: 41833, updated on 9-Dec-2024

    Summary

    Official Symbol
    SIDLprovided by FlyBase
    Official Full Name
    Shal Interactor of Di-Leucine Motifprovided by FlyBase
    Primary source
    FLYBASE:FBgn0038303
    Locus tag
    Dmel_CG6623
    See related
    AllianceGenome:FB:FBgn0038303
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Drosophila melanogaster
    Lineage
    Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora
    Also known as
    CG6623; Dmel\CG6623; TRAPPC10
    Summary
    Predicted to be involved in early endosome to Golgi transport and intra-Golgi vesicle-mediated transport. Located in Golgi apparatus. Part of TRAPPII protein complex. Is expressed in adult head; larval central nervous system; and organism. Orthologous to human TRAPPC10 (trafficking protein particle complex subunit 10). [provided by Alliance of Genome Resources, Dec 2024]
    Orthologs
    NEW
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    Genomic context

    See SIDL in Genome Data Viewer
    Location:
    88E3-88E3; 3-56 cM
    Exon count:
    6
    Annotation release Status Assembly Chr Location
    Release 6.54 current Release 6 plus ISO1 MT (GCF_000001215.4) 3R NT_033777.3 (15214762..15218874, complement)
    Release 5.57 previous assembly Release 5 (GCF_000001215.2) 3R NT_033777.2 (11040484..11044596, complement)

    Chromosome 3R - NT_033777.3Genomic Context describing neighboring genes Neighboring gene Serpin 88Eb Neighboring gene Mau2 sister chromatid cohesion factor Neighboring gene uncharacterized protein Neighboring gene uncharacterized protein Neighboring gene uncharacterized protein Neighboring gene mir-9383 stem loop Neighboring gene RNA polymerase II subunit G

    Genomic regions, transcripts, and products

    Pathways from PubChem

    Interactions

    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

    Gene Ontology Provided by FlyBase

    Process Evidence Code Pubs
    involved_in Golgi vesicle transport IC
    Inferred by Curator
    more info
    PubMed 
    involved_in Golgi vesicle transport IEA
    Inferred from Electronic Annotation
    more info
     
    involved_in early endosome to Golgi transport IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    involved_in intra-Golgi vesicle-mediated transport IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    involved_in intra-Golgi vesicle-mediated transport ISS
    Inferred from Sequence or Structural Similarity
    more info
     
    Component Evidence Code Pubs
    located_in Golgi apparatus IDA
    Inferred from Direct Assay
    more info
    PubMed 
    part_of TRAPP complex ISS
    Inferred from Sequence or Structural Similarity
    more info
     
    part_of TRAPPII protein complex IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    part_of TRAPPII protein complex IDA
    Inferred from Direct Assay
    more info
    PubMed 
    part_of TRAPPII protein complex IEA
    Inferred from Electronic Annotation
    more info
     

    General protein information

    Preferred Names
    shal interactor of Di-Leucine motif
    Names
    CG6623-PA
    SIDL-PA

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NT_033777.3 Reference assembly

      Range
      15214762..15218874 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_142174.3NP_650431.1  shal interactor of Di-Leucine motif [Drosophila melanogaster]

      See identical proteins and their annotated locations for NP_650431.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q540Y2, Q9VFB7
      Related
      FBpp0082592
      Conserved Domains (1) summary
      pfam12584
      Location:9781138
      TRAPPC10; Trafficking protein particle complex subunit 10, TRAPPC10