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    CG5885 uncharacterized protein [ Drosophila melanogaster (fruit fly) ]

    Gene ID: 34314, updated on 27-Dec-2024

    Summary

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    Official Symbol
    CG5885provided by FlyBase
    Official Full Name
    uncharacterized proteinprovided by FlyBase
    Primary source
    FLYBASE:FBgn0025700
    Locus tag
    Dmel_CG5885
    See related
    AllianceGenome:FB:FBgn0025700
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Drosophila melanogaster
    Lineage
    Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora
    Also known as
    AI945207; BEST:CK01296; CK01296; Dmel\CG5885
    Summary
    Predicted to be involved in SRP-dependent cotranslational protein targeting to membrane. Located in cytoplasm. Is expressed in several structures, including adult head; adult heart; embryonic/larval midgut primordium; gut section; and somatic trunk mesoderm derivative. Orthologous to human SSR3 (signal sequence receptor subunit 3). [provided by Alliance of Genome Resources, Dec 2024]
    Orthologs
    all
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    Genomic context

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    See CG5885 in Genome Data Viewer
    Location:
    30E4-30E4; 2-37 cM
    Exon count:
    2
    Annotation release Status Assembly Chr Location
    Release 6.54 current Release 6 plus ISO1 MT (GCF_000001215.4) 2L NT_033779.5 (9917221..9918330, complement)
    Release 5.57 previous assembly Release 5 (GCF_000001215.2) 2L NT_033779.4 (9917221..9918176, complement)

    Chromosome 2L - NT_033779.5Genomic Context describing neighboring genes Neighboring gene Splicing regulatory protein 54 Neighboring gene yippee interacting protein 2 Neighboring gene uncharacterized protein Neighboring gene uncharacterized protein

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. UNR facilitates the interaction of MLE with the lncRNA roX2 during Drosophila dosage compensation. Militti C, et al. Nat Commun, 2014 Aug 27. PMID 25158899
    2. Interplay between trauma and Pseudomonas entomophila infection in flies: a central role of the JNK pathway and of CrebA. Ragheb R, et al. Sci Rep, 2017 Nov 24. PMID 29176735, Free PMC Article
    3. A high throughput screen to identify secreted and transmembrane proteins involved in Drosophila embryogenesis. Kopczynski CC, et al. Proc Natl Acad Sci U S A, 1998 Aug 18. PMID 9707585, Free PMC Article
    4. Preservation of genes involved in sterol metabolism in cholesterol auxotrophs: facts and hypotheses. Vinci G, et al. PLoS One, 2008 Aug 6. PMID 18682733, Free PMC Article
    5. Discriminant analysis to evaluate clustering of gene expression data. Méndez MA, et al. FEBS Lett, 2002 Jul 3. PMID 12095613

    See all (40) citations in PubMed

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Homology

    Gene Ontology Provided by FlyBase

    Process Evidence Code Pubs
    involved_in SRP-dependent cotranslational protein targeting to membrane IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    located_in cytoplasm HDA PubMed 
    is_active_in endoplasmic reticulum IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    located_in membrane IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

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    Preferred Names
    uncharacterized protein
    Names
    CG5885-PA
    CG5885-PB

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NT_033779.5 Reference assembly

      Range
      9917221..9918330 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001316388.1 → NP_001303317.1  uncharacterized protein Dmel_CG5885, isoform B [Drosophila melanogaster]

      Status: REVIEWED

      UniProtKB/TrEMBL
      Q9VL69
      Conserved Domains (1) summary
      pfam07074
      Location:17 → 186
      TRAP-gamma; Translocon-associated protein, gamma subunit (TRAP-gamma)

    2. NM_135477.3 → NP_609321.1  uncharacterized protein Dmel_CG5885, isoform A [Drosophila melanogaster]

      See identical proteins and their annotated locations for NP_609321.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      Q9VL69
      Related
      FBpp0079495
      Conserved Domains (1) summary
      pfam07074
      Location:17 → 186
      TRAP-gamma; Translocon-associated protein, gamma subunit (TRAP-gamma)
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q9VL69 Q9VL69

    Gene LinkOut

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