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    CG17440 uncharacterized protein [ Drosophila melanogaster (fruit fly) ]

    Gene ID: 31879, updated on 9-Dec-2024

    Summary

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    Official Symbol
    CG17440provided by FlyBase
    Official Full Name
    uncharacterized proteinprovided by FlyBase
    Primary source
    FLYBASE:FBgn0030120
    Locus tag
    Dmel_CG17440
    See related
    AllianceGenome:FB:FBgn0030120
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Drosophila melanogaster
    Lineage
    Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora
    Also known as
    Dmel\CG17440
    Summary
    Predicted to enable methylated histone binding activity. Predicted to be involved in positive regulation of DNA-templated transcription. Predicted to be part of Set1C/COMPASS complex. Orthologous to human CXXC1 (CXXC finger protein 1). [provided by Alliance of Genome Resources, Dec 2024]
    Orthologs
    all
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    Genomic context

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    See CG17440 in Genome Data Viewer
    Location:
    8D4-8D4; 1-27 cM
    Exon count:
    4
    Annotation release Status Assembly Chr Location
    Release 6.54 current Release 6 plus ISO1 MT (GCF_000001215.4) X NC_004354.4 (9268438..9269925, complement)
    Release 5.57 previous assembly Release 5 (GCF_000001215.2) X NC_004354.3 (9162471..9163958, complement)

    Chromosome X - NC_004354.4Genomic Context describing neighboring genes Neighboring gene pseudo Neighboring gene Extracellularly regulated kinase 7 Neighboring gene CXXC finger protein 1 Neighboring gene ncRNA Neighboring gene aladin

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Using qualitative probability in reverse-engineering gene regulatory networks. Ibrahim ZM, et al. IEEE/ACM Trans Comput Biol Bioinform, 2011 Mar-Apr. PMID 20876933
    2. The PHD finger, a nuclear protein-interaction domain. Bienz M. Trends Biochem Sci, 2006 Jan. PMID 16297627
    3. Evolution of alternative splicing in newly evolved genes of Drosophila. Zhan Z, et al. Gene, 2011 Jan 1. PMID 20851753
    4. The soluble proteome of the Drosophila antenna. Anholt RR, et al. Chem Senses, 2010 Jan. PMID 19917591, Free PMC Article
    5. Genome-wide measurement of spatial expression in patterning mutants of Drosophila melanogaster. Combs PA, et al. F1000Res, 2017. PMID 28299188, Free PMC Article

    See all (23) citations in PubMed

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Homology

    Gene Ontology Provided by FlyBase

    Function Evidence Code Pubs
    enables methylated histone binding IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    Process Evidence Code Pubs
    involved_in positive regulation of DNA-templated transcription IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    Component Evidence Code Pubs
    part_of Set1C/COMPASS complex IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    part_of Set1C/COMPASS complex IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

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    Preferred Names
    uncharacterized protein
    Names
    CG17440-PA

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_004354.4 Reference assembly

      Range
      9268438..9269925 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_132327.2 → NP_572555.1  uncharacterized protein Dmel_CG17440 [Drosophila melanogaster]

      See identical proteins and their annotated locations for NP_572555.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      Q8T3Y1, Q9W353
      Related
      FBpp0071263
      Conserved Domains (2) summary
      cd15553
      Location:40 → 85
      PHD_Cfp1; PHD finger found in CXXC-type zinc finger protein 1 (Cfp1)
      pfam12269
      Location:231 → 278
      zf-CpG_bind_C; CpG binding protein zinc finger C terminal domain
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q8T3Y1 Q8T3Y1

    Gene LinkOut

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