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    2700046A07Rik RIKEN cDNA 2700046A07 gene [ Mus musculus (house mouse) ]

    Gene ID: 78449, updated on 22-Oct-2024

    Summary

    Official Symbol
    2700046A07Rikprovided by MGI
    Official Full Name
    RIKEN cDNA 2700046A07 geneprovided by MGI
    Primary source
    MGI:MGI:1919803
    See related
    Ensembl:ENSMUSG00000041789 AllianceGenome:MGI:1919803
    Gene type
    ncRNA
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    A330042I05Rik
    Expression
    Biased expression in CNS E11.5 (RPKM 1.6), frontal lobe adult (RPKM 0.8) and 11 other tissues See more
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    Genomic context

    See 2700046A07Rik in Genome Data Viewer
    Location:
    18 E1; 18 35.73 cM
    Exon count:
    3
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCm39 (GCF_000001635.27) 18 NC_000084.7 (62884745..62889418, complement)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 18 NC_000084.6 (62751674..62756347, complement)

    Chromosome 18 - NC_000084.7Genomic Context describing neighboring genes Neighboring gene serine peptidase inhibitor, Kazal type 10 Neighboring gene serine peptidase inhibitor, Kazal type 13 Neighboring gene predicted gene, 41751 Neighboring gene branched chain ketoacid dehydrogenase E1, alpha polypeptide pseudogene Neighboring gene STARR-seq mESC enhancer starr_44778 Neighboring gene CapStarr-seq enhancer MGSCv37_chr18:62879723-62879876 Neighboring gene predicted gene, 36598 Neighboring gene STARR-seq mESC enhancer starr_44779 Neighboring gene STARR-seq mESC enhancer starr_44780 Neighboring gene predicted gene, 41752 Neighboring gene adenomatosis polyposis coli down-regulated 1

    Genomic regions, transcripts, and products

    Expression

    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    General gene information

    Gene Ontology Provided by MGI

    Component Evidence Code Pubs
    is_active_in cellular_component  

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    RNA

    1. NR_037693.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AC127353, BC072581, CJ067024
      Related
      ENSMUST00000067450.4

    RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000084.7 Reference GRCm39 C57BL/6J

      Range
      62884745..62889418 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
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