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    Gm29686 predicted gene, 29686 [ Mus musculus (house mouse) ]

    Gene ID: 629091, updated on 22-Oct-2024

    Summary

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    Official Symbol
    Gm29686provided by MGI
    Official Full Name
    predicted gene, 29686provided by MGI
    Primary source
    MGI:MGI:5588845
    See related
    Ensembl:ENSMUSG00000116725 AllianceGenome:MGI:5588845
    Gene type
    ncRNA
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Expression
    Low expression observed in reference dataset See more
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    Genomic context

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    See Gm29686 in Genome Data Viewer
    Location:
    16; 16 B5
    Exon count:
    5
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCm39 (GCF_000001635.27) 16 NC_000082.7 (51801396..51807650, complement)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 16 NC_000082.6 (51981033..51987287, complement)

    Chromosome 16 - NC_000082.7Genomic Context describing neighboring genes Neighboring gene STARR-seq mESC enhancer starr_40999 Neighboring gene STARR-positive B cell enhancer mm9_chr16:51370153-51370454 Neighboring gene eukaryotic translation elongation factor 1 alpha 1 pseudogene Neighboring gene STARR-seq mESC enhancer starr_41000 Neighboring gene STARR-seq mESC enhancer starr_41001 Neighboring gene STARR-seq mESC enhancer starr_41002 Neighboring gene STARR-seq mESC enhancer starr_41003 Neighboring gene predicted gene, 57632 Neighboring gene STARR-seq mESC enhancer starr_41004 Neighboring gene STARR-seq mESC enhancer starr_41005 Neighboring gene STARR-seq mESC enhancer starr_41006 Neighboring gene STARR-positive B cell enhancer ABC_E2463 Neighboring gene STARR-positive B cell enhancer ABC_E7459 Neighboring gene STARR-positive B cell enhancer ABC_E5546 Neighboring gene STARR-seq mESC enhancer starr_41007 Neighboring gene STARR-seq mESC enhancer starr_41008 Neighboring gene STARR-positive B cell enhancer mm9_chr16:52149538-52149839 Neighboring gene Casitas B-lineage lymphoma b Neighboring gene predicted gene, 23513 Neighboring gene STARR-positive B cell enhancer mm9_chr16:52182153-52182454 Neighboring gene STARR-positive B cell enhancer ABC_E10910 Neighboring gene activated leukocyte cell adhesion molecule Neighboring gene predicted gene, 32597

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Bibliography

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    Related articles in PubMed

    1. Antisense transcription in the mammalian transcriptome. Katayama S, et al. Science, 2005 Sep 2. PMID 16141073
    2. High-efficiency full-length cDNA cloning. Carninci P, et al. Methods Enzymol, 1999. PMID 10349636
    3. RIKEN integrated sequence analysis (RISA) system--384-format sequencing pipeline with 384 multicapillary sequencer. Shibata K, et al. Genome Res, 2000 Nov. PMID 11076861, Free PMC Article
    4. Normalization and subtraction of cap-trapper-selected cDNAs to prepare full-length cDNA libraries for rapid discovery of new genes. Carninci P, et al. Genome Res, 2000 Oct. PMID 11042159, Free PMC Article
    5. Functional annotation of a full-length mouse cDNA collection. Kawai J, et al. Nature, 2001 Feb 8. PMID 11217851

    See all (7) citations in PubMed

    GeneRIFs: Gene References Into Functions

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    RNA

    1. NR_153657.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AC154478
      Related
      ENSMUST00000303551.1

    RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000082.7 Reference GRCm39 C57BL/6J

      Range
      51801396..51807650 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein Strain
    Heading Accession and Version

    Gene LinkOut

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