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    Gpatch11 G patch domain containing 11 [ Mus musculus (house mouse) ]

    Gene ID: 53951, updated on 9-Dec-2024

    Summary

    Official Symbol
    Gpatch11provided by MGI
    Official Full Name
    G patch domain containing 11provided by MGI
    Primary source
    MGI:MGI:1858435
    See related
    Ensembl:ENSMUSG00000050668 AllianceGenome:MGI:1858435
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    Ccdc75; 2310002B06Rik
    Summary
    Predicted to enable nucleic acid binding activity. Predicted to be active in kinetochore. Orthologous to human GPATCH11 (G-patch domain containing 11). [provided by Alliance of Genome Resources, Dec 2024]
    Expression
    Ubiquitous expression in cerebellum adult (RPKM 5.3), CNS E18 (RPKM 5.1) and 28 other tissues See more
    Orthologs
    NEW
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    Genomic context

    See Gpatch11 in Genome Data Viewer
    Location:
    17 E3; 17 49.54 cM
    Exon count:
    11
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCm39 (GCF_000001635.27) 17 NC_000083.7 (79142951..79155737)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 17 NC_000083.6 (78835516..78848308)

    Chromosome 17 - NC_000083.7Genomic Context describing neighboring genes Neighboring gene ubiquitin-conjugating enzyme E2C pseudogene Neighboring gene HEAT repeat containing 5B Neighboring gene STARR-positive B cell enhancer ABC_E773 Neighboring gene eukaryotic translation initiation factor 2-alpha kinase 2 Neighboring gene eukaryotic translation elongation factor 1 alpha 1 pseudogene Neighboring gene predicted gene, 26637 Neighboring gene sulfotransferase family, cytosolic, 6B, member 1

    Genomic regions, transcripts, and products

    Expression

    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Variation

    Alleles

    Alleles of this type are documented at Mouse Genome Informatics  (MGI)
    • Endonuclease-mediated (1) 

    General gene information

    Clone Names

    • MGC106516

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    enables molecular_function  
    enables nucleic acid binding  
    Component Evidence Code Pubs
    is_active_in kinetochore  
    located_in kinetochore  
    located_in kinetochore  

    General protein information

    Preferred Names
    G patch domain-containing protein 11
    Names
    coiled-coil domain containing 75
    coiled-coil domain-containing protein 75

    NCBI Reference Sequences (RefSeq)

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001403213.1NP_001390142.1  G patch domain-containing protein 11

      Status: VALIDATED

      Source sequence(s)
      AC151264, AC154274
      UniProtKB/Swiss-Prot
      B9EHQ5, Q05BG4, Q3UFS4, Q569F3
      UniProtKB/TrEMBL
      A0A0R4J215
    2. NM_181649.7NP_857632.4  G patch domain-containing protein 11

      See identical proteins and their annotated locations for NP_857632.4

      Status: VALIDATED

      Source sequence(s)
      AC151264, AC154274
      Consensus CDS
      CCDS28979.1
      UniProtKB/Swiss-Prot
      B9EHQ5, Q05BG4, Q3UFS4, Q569F3
      UniProtKB/TrEMBL
      A0A0R4J215
      Related
      ENSMUSP00000126814.2, ENSMUST00000170759.3
      Conserved Domains (2) summary
      smart00443
      Location:74117
      G_patch; glycine rich nucleic binding domain
      pfam13821
      Location:216263
      DUF4187; Domain of unknown function (DUF4187)

    RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000083.7 Reference GRCm39 C57BL/6J

      Range
      79142951..79155737
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_030249901.2XP_030105761.1  G patch domain-containing protein 11 isoform X2

      UniProtKB/Swiss-Prot
      B9EHQ5, Q05BG4, Q3UFS4, Q569F3
      Conserved Domains (2) summary
      smart00443
      Location:4689
      G_patch; glycine rich nucleic binding domain
      pfam13821
      Location:188235
      DUF4187; Domain of unknown function (DUF4187)
    2. XM_017317577.3XP_017173066.1  G patch domain-containing protein 11 isoform X2

      UniProtKB/Swiss-Prot
      B9EHQ5, Q05BG4, Q3UFS4, Q569F3
      Conserved Domains (2) summary
      smart00443
      Location:4689
      G_patch; glycine rich nucleic binding domain
      pfam13821
      Location:188235
      DUF4187; Domain of unknown function (DUF4187)
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