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    PUB17 plant U-box 17 [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 839808, updated on 18-Sep-2024

    Summary

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    Official Symbol
    PUB17
    Official Full Name
    plant U-box 17
    Primary source
    TAIR:AT1G29340
    Locus tag
    AT1G29340
    See related
    Araport:AT1G29340
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    ARABIDOPSIS THALIANA PLANT U-BOX 17; ATPUB17; F15D2.34; F15D2_34; plant U-box 17
    Summary
    Encodes a protein containing a UND, a U-box, and an ARM domain. This protein has E3 ubiquitin ligase activity. It is required for cell death and full resistance specified by Arabidopsis RPM1 and RPS4 resistance proteins against Pseudomonas syringae pv tomato.
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    Genomic context

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    See PUB17 in Genome Data Viewer
    Location:
    chromosome: 1
    Exon count:
    1
    Sequence:
    Chromosome: 1; NC_003070.9 (10264043..10266917)

    Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene SecY protein transport family protein Neighboring gene Transducin/WD40 repeat-like superfamily protein Neighboring gene ER lumen protein retaining receptor family protein Neighboring gene RNA polymerase II degradation factor-like protein (DUF1296) Neighboring gene ncRNA Neighboring gene uncharacterized protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003070.9

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. The E3 ubiquitin ligase activity of arabidopsis PLANT U-BOX17 and its functional tobacco homolog ACRE276 are required for cell death and defense. Yang CW, et al. Plant Cell, 2006 Apr. PMID 16531496, Free PMC Article
    2. Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana. Theologis A, et al. Nature, 2000 Dec 14. PMID 11130712

    GeneRIFs: Gene References Into Functions

    General gene information

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    NM_102674.4

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables ubiquitin-protein transferase activity IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    Process Evidence Code Pubs
    acts_upstream_of_or_within defense response to fungus IGI
    Inferred from Genetic Interaction
    more info
    		 PubMed 
    acts_upstream_of_or_within defense response to other organism IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    acts_upstream_of_or_within plant-type hypersensitive response IGI
    Inferred from Genetic Interaction
    more info
    		 PubMed 
    acts_upstream_of_or_within protein ubiquitination IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    involved_in protein ubiquitination IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    located_in chloroplast ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    plant U-box 17
    NP_174228.1
    • plant U-box 17 (PUB17); FUNCTIONS IN: ubiquitin-protein ligase activity; INVOLVED IN: defense response to fungus, incompatible interaction, defense response, incompatible interaction, apoptosis, protein ubiquitination; LOCATED IN: ubiquitin ligase complex; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: U box domain (InterPro:IPR003613), Armadillo-like helical (InterPro:IPR011989), Armadillo (InterPro:IPR000225), Armadillo-type fold (InterPro:IPR016024); BEST Arabidopsis thaliana protein match is: ARM repeat superfamily protein (TAIR:AT5G01830.1); Has 4178 Blast hits to 3456 proteins in 244 species: Archae - 2; Bacteria - 18; Metazoa - 476; Fungi - 388; Plants - 2844; Viruses - 3; Other Eukaryotes - 447 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003070.9 Reference assembly

      Range
      10264043..10266917
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_102674.4 → NP_174228.1  plant U-box 17 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_174228.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q8VZK7, Q9C7R6
      UniProtKB/TrEMBL
      A0A178WA68, A0A7G2DTR7
      Conserved Domains (4) summary
      PLN03200
      Location:403 → 563
      PLN03200; cellulose synthase-interactive protein; Provisional
      sd00044
      Location:533 → 559
      HEAT; HEAT repeat [structural motif]
      sd00043
      Location:408 → 433
      ARM; armadillo repeat [structural motif]
      cd16664
      Location:309 → 351
      RING-Ubox_PUB; U-box domain, a modified RING finger, found in Arabidopsis plant U-box proteins (AtPUB) and similar proteins
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q9C7R6.1

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