U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from GEO Profiles

    • Showing Current items.

    Y105C5B.11 RING-type domain-containing protein [ Caenorhabditis elegans ]

    Gene ID: 190893, updated on 9-Dec-2024

    Summary

    Go to the top of the page Help
    Official Symbol
    Y105C5B.11
    Official Full Name
    RING-type domain-containing protein
    Primary source
    WormBase:WBGene00013651
    Locus tag
    CELE_Y105C5B.11
    See related
    AllianceGenome:WB:WBGene00013651
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Caenorhabditis elegans (strain: Bristol N2)
    Lineage
    Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis
    Summary
    Predicted to be involved in innate immune response. [provided by Alliance of Genome Resources, Dec 2024]
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    See Y105C5B.11 in Genome Data Viewer
    Location:
    chromosome: IV
    Exon count:
    8
    Sequence:
    Chromosome: IV; NC_003282.8 (15937062..15941503, complement)

    Chromosome IV - NC_003282.8Genomic Context describing neighboring genes Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene ncRNA

    Genomic regions, transcripts, and products

    Go to the top of the page Help
    Genomic Sequence:
    NC_003282.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

    Go to the top of the pageHelp

    Related articles in PubMed

    1. Genome sequence of the nematode C. elegans: a platform for investigating biology. C. elegans Sequencing Consortium. Science, 1998 Dec 11. PMID 9851916

    GeneRIFs: Gene References Into Functions

    General gene information

    Go to the top of the page Help

    Homology

    Gene Ontology Provided by WormBase

    Process Evidence Code Pubs
    involved_in innate immune response IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  

    General protein information

    Go to the top of the page Help
    Preferred Names
    RING-type domain-containing protein
    NP_001263827.1
    • Confirmed by transcript evidence
    NP_502900.3
    • Confirmed by transcript evidence

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003282.8 Reference assembly

      Range
      15937062..15941503 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_070499.4 → NP_502900.3  RING-type domain-containing protein [Caenorhabditis elegans]

      See identical proteins and their annotated locations for NP_502900.3

      Status: REVIEWED

      UniProtKB/TrEMBL
      Q9U313
      Conserved Domains (3) summary
      cd00162
      Location:528 → 569
      RING_Ubox; RING-H2 finger (C3H2C3-type) [structural motif]
      pfam03938
      Location:421 → 489
      OmpH; Outer membrane protein (OmpH-like)
      cl17238
      Location:527 → 569
      RING_Ubox; The superfamily of RING finger (Really Interesting New Gene) domain and U-box domain

    2. NM_001276898.2 → NP_001263827.1  RING-type domain-containing protein [Caenorhabditis elegans]

      See identical proteins and their annotated locations for NP_001263827.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      K8ERW6
      Conserved Domains (3) summary
      cd00162
      Location:717 → 758
      RING_Ubox; RING-H2 finger (C3H2C3-type) [structural motif]
      pfam03938
      Location:610 → 678
      OmpH; Outer membrane protein (OmpH-like)
      cl17238
      Location:716 → 758
      RING_Ubox; The superfamily of RING finger (Really Interesting New Gene) domain and U-box domain
    Nucleotide Protein
    Heading Accession and Version

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

    Molecular Biology Databases
    Research Materials
    Tools