pno-1 RNA-binding protein pno-1 [Caenorhabditis elegans] - Gene

Summary

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Official Symbol: pno-1
Official Full Name: RNA-binding protein pno-1
Primary source: WormBase:WBGene00013144
Locus tag: CELE_Y53C12B.2
See related: AllianceGenome:WB:WBGene00013144
Gene type: protein coding
RefSeq status: REVIEWED
Organism: Caenorhabditis elegans (strain: Bristol N2)
Lineage: Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis
Summary: Predicted to enable RNA binding activity. Predicted to be involved in ribosomal small subunit biogenesis. Predicted to be located in nucleolus. Predicted to be part of small-subunit processome. Predicted to be active in nucleus. Orthologous to human PNO1 (partner of NOB1 homolog). [provided by Alliance of Genome Resources, Dec 2024]
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Genomic context

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See pno-1 in Genome Data Viewer

Location:: chromosome: II

Exon count:: 7

Sequence:: Chromosome: II; NC_003280.10 (9739226..9742884, complement)

Chromosome II - NC_003280.10 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Go to reference sequence details

Genomic Sequence:: NC_003280.10

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

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Interactions

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Products	Interactant	Other Gene	Complex	Source	Pubs	Description

General gene information

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Markers

Y53C12B.1 (e-PCR)
- UniSTS:310310

Y53C12B.2 (e-PCR)
- UniSTS:320415

Homology

Orthologs from OrthoDB

Gene Ontology Provided by WormBase

Function	Evidence Code	Pubs
enables RNA binding	IEA Inferred from Electronic Annotation more info
enables nucleic acid binding	IEA Inferred from Electronic Annotation more info

Process	Evidence Code	Pubs
involved_in ribosomal small subunit biogenesis	ISS Inferred from Sequence or Structural Similarity more info

Component	Evidence Code	Pubs
located_in nucleolus	IEA Inferred from Electronic Annotation more info
located_in nucleolus	ISS Inferred from Sequence or Structural Similarity more info
is_active_in nucleus	IBA Inferred from Biological aspect of Ancestor more info
located_in nucleus	IEA Inferred from Electronic Annotation more info
part_of small-subunit processome	ISS Inferred from Sequence or Structural Similarity more info

General protein information

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Preferred Names: RNA-binding protein pno-1

NP_496099.1

Confirmed by transcript evidence

NCBI Reference Sequences (RefSeq)

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Genome Annotation

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Reference assembly

Genomic

NC_003280.10 Reference assembly

Range

9739226..9742884 complement

Download

GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

NM_063698.5 → NP_496099.1 RNA-binding protein pno-1 [Caenorhabditis elegans]

See identical proteins and their annotated locations for NP_496099.1

Status: REVIEWED

UniProtKB/Swiss-Prot

O18216

Conserved Domains (2) summary

smart00322
Location:202 → 254

KH; K homology RNA-binding domain

COG1094
Location:98 → 276

Krr1; rRNA processing protein Krr1/Pno1, contains KH domain [Translation, ribosomal structure and biogenesis]