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    acs-16 AMP-dependent synthetase/ligase domain-containing protein [ Caenorhabditis elegans ]

    Gene ID: 171714, updated on 9-Dec-2024

    Summary

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    Official Symbol
    acs-16
    Official Full Name
    AMP-dependent synthetase/ligase domain-containing protein
    Primary source
    WormBase:WBGene00018579
    Locus tag
    CELE_F47G6.2
    See related
    AllianceGenome:WB:WBGene00018579
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Caenorhabditis elegans (strain: Bristol N2)
    Lineage
    Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis
    Summary
    Predicted to enable medium-chain fatty acid-CoA ligase activity. Predicted to be involved in fatty acid metabolic process. [provided by Alliance of Genome Resources, Dec 2024]
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    Genomic context

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    See acs-16 in Genome Data Viewer
    Location:
    chromosome: I
    Exon count:
    10
    Sequence:
    Chromosome: I; NC_003279.8 (1471075..1479923)

    Chromosome I - NC_003279.8Genomic Context describing neighboring genes Neighboring gene Myosin VI cargo binding domain-containing protein;Myosin motor domain-containing protein Neighboring gene Glutathione S-transferase Neighboring gene LEM domain-containing protein Neighboring gene ncRNA Neighboring gene Dystrobrevin-1 Neighboring gene tRNA (32-2'-O)-methyltransferase regulator THADA

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003279.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Fatty acid desaturation and the regulation of adiposity in Caenorhabditis elegans. Brock TJ, et al. Genetics, 2007 Jun. PMID 17435249, Free PMC Article
    2. A Caenorhabditis elegans nutrient response system partially dependent on nuclear receptor NHR-49. Van Gilst MR, et al. Proc Natl Acad Sci U S A, 2005 Sep 20. PMID 16157872, Free PMC Article
    3. Comparative genomics and functional study of lipid metabolic genes in Caenorhabditis elegans. Zhang Y, et al. BMC Genomics, 2013 Mar 12. PMID 23496871, Free PMC Article
    4. EPIC: software toolkit for elution profile-based inference of protein complexes. Hu LZ, et al. Nat Methods, 2019 Aug. PMID 31308550, Free PMC Article
    5. Genome sequence of the nematode C. elegans: a platform for investigating biology. C. elegans Sequencing Consortium. Science, 1998 Dec 11. PMID 9851916

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by WormBase

    Function Evidence Code Pubs
    enables medium-chain fatty acid-CoA ligase activity IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    Process Evidence Code Pubs
    involved_in fatty acid metabolic process IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  

    General protein information

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    Preferred Names
    AMP-dependent synthetase/ligase domain-containing protein
    NP_490859.1
    • Confirmed by transcript evidence

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003279.8 Reference assembly

      Range
      1471075..1479923
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_058458.7 → NP_490859.1  AMP-dependent synthetase/ligase domain-containing protein [Caenorhabditis elegans]

      See identical proteins and their annotated locations for NP_490859.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      Q9TZI7
      Conserved Domains (1) summary
      COG0318
      Location:35 → 565
      CaiC; Acyl-CoA synthetase (AMP-forming)/AMP-acid ligase II [Lipid transport and metabolism, Secondary metabolites biosynthesis, transport and catabolism]
    Nucleotide Protein
    Heading Accession and Version

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