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    Y43C5B.3 SLC (SoLute Carrier) homolog [ Caenorhabditis elegans ]

    Gene ID: 177922, updated on 9-Dec-2024

    Summary

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    Official Symbol
    Y43C5B.3
    Official Full Name
    SLC (SoLute Carrier) homolog
    Primary source
    WormBase:WBGene00012786
    Locus tag
    CELE_Y43C5B.3
    See related
    AllianceGenome:WB:WBGene00012786
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Caenorhabditis elegans (strain: Bristol N2)
    Lineage
    Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis
    Summary
    Predicted to enable branched-chain amino acid transmembrane transporter activity. Predicted to be involved in branched-chain amino acid transport. Predicted to be located in membrane. Predicted to be active in mitochondrion. Orthologous to human SLC25A44 (solute carrier family 25 member 44). [provided by Alliance of Genome Resources, Dec 2024]
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    Genomic context

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    See Y43C5B.3 in Genome Data Viewer
    Location:
    chromosome: IV
    Exon count:
    5
    Sequence:
    Chromosome: IV; NC_003282.8 (10353167..10355120)

    Chromosome IV - NC_003282.8Genomic Context describing neighboring genes Neighboring gene Calcium/calmodulin-dependent protein kinase II association-domain domain-containing protein;Calcium/calmodulin-dependent protein kinase type II;calcium/calmodulin-dependent protein kinase Neighboring gene ncRNA Neighboring gene Tyrosine-protein kinase Neighboring gene DH domain-containing protein;GON-4-like protein Neighboring gene G-patch domain and KOW motifs-containing protein homolog 1 Neighboring gene glucuronosyltransferase Neighboring gene Deacetylase sirtuin-type domain-containing protein;NAD-dependent protein deacetylase sir-2.1

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003282.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Genome sequence of the nematode C. elegans: a platform for investigating biology. C. elegans Sequencing Consortium. Science, 1998 Dec 11. PMID 9851916

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by WormBase

    Function Evidence Code Pubs
    enables branched-chain amino acid transmembrane transporter activity IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    enables branched-chain amino acid transmembrane transporter activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    Process Evidence Code Pubs
    involved_in branched-chain amino acid catabolic process IEA
    Inferred from Electronic Annotation
    more info
    		  
    involved_in branched-chain amino acid transport IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    Component Evidence Code Pubs
    located_in membrane IEA
    Inferred from Electronic Annotation
    more info
    		  
    is_active_in mitochondrion IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    located_in mitochondrion IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

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    Preferred Names
    SLC (SoLute Carrier) homolog
    NP_501908.2
    • Confirmed by transcript evidence

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003282.8 Reference assembly

      Range
      10353167..10355120
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_069507.6 → NP_501908.2  SLC (SoLute Carrier) homolog [Caenorhabditis elegans]

      See identical proteins and their annotated locations for NP_501908.2

      Status: REVIEWED

      UniProtKB/TrEMBL
      G5EDJ9
      Conserved Domains (1) summary
      pfam00153
      Location:56 → 126
      Mito_carr; Mitochondrial carrier protein
    Nucleotide Protein
    Heading Accession and Version

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