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    fbxa-116 F-box domain-containing protein [ Caenorhabditis elegans ]

    Gene ID: 190968, updated on 9-Dec-2024

    Summary

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    Official Symbol
    fbxa-116
    Official Full Name
    F-box domain-containing protein
    Primary source
    WormBase:WBGene00013754
    Locus tag
    CELE_Y113G7B.1
    See related
    AllianceGenome:WB:WBGene00013754
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Caenorhabditis elegans (strain: Bristol N2)
    Lineage
    Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis
    Summary
    Involved in innate immune response. [provided by Alliance of Genome Resources, Dec 2024]
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    Genomic context

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    See fbxa-116 in Genome Data Viewer
    Location:
    chromosome: V
    Exon count:
    4
    Sequence:
    Chromosome: V; NC_003283.11 (20187657..20188890, complement)

    Chromosome V - NC_003283.11Genomic Context describing neighboring genes Neighboring gene pseudo Neighboring gene pseudo Neighboring gene Serpentine Receptor, class Z Neighboring gene F-box domain-containing protein Neighboring gene DUF904 domain-containing protein Neighboring gene ncRNA Neighboring gene Serpentine Receptor, class H

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003283.11

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. A conserved role for a GATA transcription factor in regulating epithelial innate immune responses. Shapira M, et al. Proc Natl Acad Sci U S A, 2006 Sep 19. PMID 16968778, Free PMC Article
    2. The F-box protein family. Kipreos ET, et al. Genome Biol, 2000. PMID 11178263, Free PMC Article
    3. Empirically controlled mapping of the Caenorhabditis elegans protein-protein interactome network. Simonis N, et al. Nat Methods, 2009 Jan. PMID 19123269, Free PMC Article
    4. Genome sequence of the nematode C. elegans: a platform for investigating biology. C. elegans Sequencing Consortium. Science, 1998 Dec 11. PMID 9851916

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by WormBase

    Process Evidence Code Pubs
    involved_in innate immune response HEP PubMed 

    General protein information

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    Preferred Names
    F-box domain-containing protein
    NP_001041184.1
    • Confirmed by transcript evidence
    NP_001041185.1
    • Confirmed by transcript evidence

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003283.11 Reference assembly

      Range
      20187657..20188890 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001047720.2 → NP_001041185.1  F-box domain-containing protein [Caenorhabditis elegans]

      See identical proteins and their annotated locations for NP_001041185.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      Q2YS44
      Conserved Domains (2) summary
      smart00256
      Location:32 → 71
      FBOX; A Receptor for Ubiquitination Targets
      pfam01827
      Location:153 → 297
      FTH; FTH domain

    2. NM_001047719.1 → NP_001041184.1  F-box domain-containing protein [Caenorhabditis elegans]

      See identical proteins and their annotated locations for NP_001041184.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      Q9U2Y1
      Conserved Domains (2) summary
      smart00256
      Location:32 → 71
      FBOX; A Receptor for Ubiquitination Targets
      pfam01827
      Location:125 → 200
      FTH; FTH domain
    Nucleotide Protein
    Heading Accession and Version

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