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    Y57G11A.2 Vitelline membrane outer layer protein 1 [ Caenorhabditis elegans ]

    Gene ID: 178389, updated on 4-Jan-2025

    Summary

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    Official Symbol
    Y57G11A.2
    Official Full Name
    Vitelline membrane outer layer protein 1
    Primary source
    WormBase:WBGene00013290
    Locus tag
    CELE_Y57G11A.2
    See related
    AllianceGenome:WB:WBGene00013290
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Caenorhabditis elegans (strain: Bristol N2)
    Lineage
    Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis
    Summary
    Predicted to be active in extracellular space. Orthologous to human VMO1 (vitelline membrane outer layer 1 homolog). [provided by Alliance of Genome Resources, Jan 2025]
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    Genomic context

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    See Y57G11A.2 in Genome Data Viewer
    Location:
    chromosome: IV
    Exon count:
    6
    Sequence:
    Chromosome: IV; NC_003282.8 (14517022..14519523, complement)

    Chromosome IV - NC_003282.8Genomic Context describing neighboring genes Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene Secreted protein Neighboring gene ncRNA

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003282.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Microtubule severing by the katanin complex is activated by PPFR-1-dependent MEI-1 dephosphorylation. Gomes JE, et al. J Cell Biol, 2013 Aug 5. PMID 23918937, Free PMC Article
    2. A genome-wide study of PDZ-domain interactions in C. elegans reveals a high frequency of non-canonical binding. Lenfant N, et al. BMC Genomics, 2010 Nov 26. PMID 21110867, Free PMC Article
    3. Genome sequence of the nematode C. elegans: a platform for investigating biology. C. elegans Sequencing Consortium. Science, 1998 Dec 11. PMID 9851916

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by WormBase

    Component Evidence Code Pubs
    is_active_in extracellular space IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  

    General protein information

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    Preferred Names
    Vitelline membrane outer layer protein 1
    NP_502758.1
    • Confirmed by transcript evidence

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003282.8 Reference assembly

      Range
      14517022..14519523 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_070357.5 → NP_502758.1  Vitelline membrane outer layer protein 1 [Caenorhabditis elegans]

      See identical proteins and their annotated locations for NP_502758.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      G5EBG1
      Conserved Domains (2) summary
      cd00220
      Location:22 → 200
      VMO-I; Vitelline membrane outer layer protein I (VMO-I) domain, VMO-I is one of the proteins found in the outer layer of the vitelline membrane of poultry eggs; VMO-I, lysozyme, and VMO-II are tightly bound to ovomucin; this complex forms the backbone of the ...
      pfam03762
      Location:24 → 199
      VOMI; Vitelline membrane outer layer protein I (VOMI)
    Nucleotide Protein
    Heading Accession and Version

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