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    CIPK13 CBL-interacting protein kinase 13 [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 817979, updated on 18-Sep-2024

    Summary

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    Official Symbol
    CIPK13
    Official Full Name
    CBL-interacting protein kinase 13
    Primary source
    TAIR:AT2G34180
    Locus tag
    AT2G34180
    See related
    Araport:AT2G34180
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    ATWL2; CBL-interacting protein kinase 13; F13P17.2; F13P17_2; SNF1-RELATED PROTEIN KINASE 3.7; SnRK3.7; WL2; WPL4-LIKE 2
    Summary
    Encodes CBL-interacting protein kinase 13 (CIPK13).
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    Genomic context

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    See CIPK13 in Genome Data Viewer
    Location:
    chromosome: 2
    Exon count:
    1
    Sequence:
    Chromosome: 2; NC_003071.7 (14430761..14432482, complement)

    Chromosome 2 - NC_003071.7Genomic Context describing neighboring genes Neighboring gene SCAR family protein Neighboring gene Alba DNA/RNA-binding protein Neighboring gene hypothetical protein (DUF688) Neighboring gene ncRNA Neighboring gene uncharacterized protein Neighboring gene uncharacterized protein Neighboring gene Xanthine/uracil permease family protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003071.7

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Variable interactions between sucrose non-fermented 1-related protein kinases and regulatory proteins in higher plants. Nozawa A, et al. Biosci Biotechnol Biochem, 2003 Dec. PMID 14730130
    2. The NAF domain defines a novel protein-protein interaction module conserved in Ca2+-regulated kinases. Albrecht V, et al. EMBO J, 2001 Mar 1. PMID 11230129, Free PMC Article
    3. Comprehensive structural, interaction and expression analysis of CBL and CIPK complement during abiotic stresses and development in rice. Kanwar P, et al. Cell Calcium, 2014 Aug. PMID 24970010
    4. Border control--a membrane-linked interactome of Arabidopsis. Jones AM, et al. Science, 2014 May 16. PMID 24833385
    5. Sequence and analysis of chromosome 2 of the plant Arabidopsis thaliana. Lin X, et al. Nature, 1999 Dec 16. PMID 10617197

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Homology

    NM_128969.2

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables protein binding IPI
    Inferred from Physical Interaction
    more info
    		 PubMed 
    enables protein serine/threonine kinase activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    Process Evidence Code Pubs
    involved_in signal transduction IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    CBL-interacting protein kinase 13
    NP_180965.1
    • CBL-interacting protein kinase 13 (CIPK13); FUNCTIONS IN: protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding; INVOLVED IN: signal transduction, protein amino acid phosphorylation; EXPRESSED IN: root, pollen tube; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Serine/threonine-protein kinase domain (InterPro:IPR002290), NAF/FISL domain (InterPro:IPR018451), Serine/threonine-protein kinase-like domain (InterPro:IPR017442), Protein kinase-like domain (InterPro:IPR011009), Serine/threonine-protein kinase, active site (InterPro:IPR008271), NAF domain (InterPro:IPR004041), CBL-interacting protein kinase (InterPro:IPR020660), Protein kinase, catalytic domain (InterPro:IPR000719), Calcium/calmodulin-dependent protein kinase-like (InterPro:IPR020636); BEST Arabidopsis thaliana protein match is: CBL-interacting protein kinase 18 (TAIR:AT1G29230.1); Has 130054 Blast hits to 127991 proteins in 4467 species: Archae - 168; Bacteria - 15242; Metazoa - 47793; Fungi - 12893; Plants - 31934; Viruses - 521; Other Eukaryotes - 21503 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003071.7 Reference assembly

      Range
      14430761..14432482 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_128969.2 → NP_180965.1  CBL-interacting protein kinase 13 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_180965.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      O22971
      UniProtKB/TrEMBL
      A0A178VYP1, A0A5S9X3R1
      Conserved Domains (2) summary
      cd12195
      Location:372 → 479
      CIPK_C; C-terminal regulatory domain of Calcineurin B-Like (CBL)-interacting protein kinases
      cl21453
      Location:56 → 310
      PKc_like; Protein Kinases, catalytic domain
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    O22971.2

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