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    PDLP6 plasmodesmata-located protein 6 [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 814695, updated on 18-Sep-2024

    Summary

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    Official Symbol
    PDLP6
    Official Full Name
    plasmodesmata-located protein 6
    Primary source
    TAIR:AT2G01660
    Locus tag
    AT2G01660
    See related
    Araport:AT2G01660
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    plasmodesmata-located protein 6; T8O11.17; T8O11_17
    Summary
    Encodes a plasmodesmal protein that may be involved in the intercellular movement of molecules through the plasmodesmata. The protein has two DUF26 domains and a single transmembrane domain.
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    Genomic context

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    See PDLP6 in Genome Data Viewer
    Location:
    chromosome: 2
    Exon count:
    3
    Sequence:
    Chromosome: 2; NC_003071.7 (290573..292688, complement)

    Chromosome 2 - NC_003071.7Genomic Context describing neighboring genes Neighboring gene ribosome biogenesis protein Neighboring gene plant UBX domain-containing protein 2 Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene uncharacterized protein Neighboring gene nudix hydrolase homolog 17

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003071.7

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Specific targeting of a plasmodesmal protein affecting cell-to-cell communication. Thomas CL, et al. PLoS Biol, 2008 Jan. PMID 18215111, Free PMC Article
    2. A membrane protein/signaling protein interaction network for Arabidopsis version AMPv2. Lalonde S, et al. Front Physiol, 2010. PMID 21423366, Free PMC Article
    3. Arabidopsis plasmodesmal proteome. Fernandez-Calvino L, et al. PLoS One, 2011 Apr 20. PMID 21533090, Free PMC Article
    4. Border control--a membrane-linked interactome of Arabidopsis. Jones AM, et al. Science, 2014 May 16. PMID 24833385
    5. Sequence and analysis of chromosome 2 of the plant Arabidopsis thaliana. Lin X, et al. Nature, 1999 Dec 16. PMID 10617197

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Homology

    NM_001335072.1
    NM_126227.3
    NM_201665.2

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    located_in extracellular region ISM
    Inferred from Sequence Model
    more info
    		  
    located_in plasmodesma HDA PubMed 
    located_in plasmodesma IDA
    Inferred from Direct Assay
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    plasmodesmata-located protein 6
    NP_565272.1
    • plasmodesmata-located protein 6 (PDLP6); CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF26 (InterPro:IPR002902); BEST Arabidopsis thaliana protein match is: plasmodesmata-located protein 7 (TAIR:AT5G37660.2); Has 1458 Blast hits to 1310 proteins in 27 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 1458; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
    NP_973394.1
    • plasmodesmata-located protein 6 (PDLP6); CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF26 (InterPro:IPR002902); BEST Arabidopsis thaliana protein match is: plasmodesmata-located protein 7 (TAIR:AT5G37660.2); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003071.7 Reference assembly

      Range
      290573..292688 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_126227.3 → NP_565272.1  plasmodesmata-located protein 6 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_565272.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q0WTE1, Q3EC88, Q8LDG0, Q8W466, Q9ZU94
      UniProtKB/TrEMBL
      A0A178VZC0, A0A5S9WWC9, A0A654ER47
      Conserved Domains (1) summary
      pfam01657
      Location:31 → 128
      Stress-antifung; Salt stress response/antifungal

    2. NM_001335072.1 → NP_001324707.1  plasmodesmata-located protein 6 [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178VYC5, A0A178VZC0, A0A1P8B0Y6, A0A384K8H6
      Conserved Domains (1) summary
      pfam01657
      Location:31 → 128
      Stress-antifung; Salt stress response/antifungal

    3. NM_201665.2 → NP_973394.1  plasmodesmata-located protein 6 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_973394.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178VZC0
      Conserved Domains (1) summary
      pfam01657
      Location:33 → 128
      Stress-antifung; Salt stress response/antifungal
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q9ZU94.2

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