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    FAM210B-like protein, putative (DUF1279) [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 817272, updated on 18-Sep-2024

    Summary

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    Official Full Name
    FAM210B-like protein, putative (DUF1279)
    Primary source
    TAIR:AT2G27290
    Locus tag
    AT2G27290
    See related
    Araport:AT2G27290
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    F12K2.13; F12K2_13
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    Genomic context

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    Location:
    chromosome: 2
    Exon count:
    3
    Sequence:
    Chromosome: 2; NC_003071.7 (11678305..11679919, complement)

    Chromosome 2 - NC_003071.7Genomic Context describing neighboring genes Neighboring gene coiled-coil protein (DUF2040) Neighboring gene nuclear speckle splicing regulatory-like protein (DUF2040) Neighboring gene NTM1-like 8 Neighboring gene F-box family protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003071.7

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. De-etiolation-induced protein 1 (DEIP1) mediates assembly of the cytochrome b(6)f complex in Arabidopsis. Sandoval-Ibáñez O, et al. Nat Commun, 2022 Jul 13. PMID 35831297, Free PMC Article
    2. New functions of the thylakoid membrane proteome of Arabidopsis thaliana revealed by a simple, fast, and versatile fractionation strategy. Peltier JB, et al. J Biol Chem, 2004 Nov 19. PMID 15322131
    3. Sorting signals, N-terminal modifications and abundance of the chloroplast proteome. Zybailov B, et al. PLoS One, 2008 Apr 23. PMID 18431481, Free PMC Article
    4. Border control--a membrane-linked interactome of Arabidopsis. Jones AM, et al. Science, 2014 May 16. PMID 24833385
    5. Sequence and analysis of chromosome 2 of the plant Arabidopsis thaliana. Lin X, et al. Nature, 1999 Dec 16. PMID 10617197

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    NM_128288.4

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    located_in chloroplast HDA PubMed 
    located_in chloroplast ISM
    Inferred from Sequence Model
    more info
    		  
    located_in chloroplast thylakoid membrane HDA PubMed 
    located_in thylakoid IDA
    Inferred from Direct Assay
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    FAM210B-like protein, putative (DUF1279)
    NP_565645.1
    • Protein of unknown function (DUF1279); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast thylakoid membrane, chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1279 (InterPro:IPR009688); Has 214 Blast hits to 212 proteins in 70 species: Archae - 0; Bacteria - 0; Metazoa - 123; Fungi - 0; Plants - 72; Viruses - 0; Other Eukaryotes - 19 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003071.7 Reference assembly

      Range
      11678305..11679919 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_128288.4 → NP_565645.1  FAM210B-like protein, putative (DUF1279) [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_565645.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A654EY72, Q8LBI5, Q9XIN6
      Conserved Domains (1) summary
      pfam06916
      Location:103 → 184
      DUF1279; Protein of unknown function (DUF1279)
    Nucleotide Protein
    Heading Accession and Version

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