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    Rubisco methyltransferase family protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 839075, updated on 18-Sep-2024

    Summary

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    Official Full Name
    Rubisco methyltransferase family protein
    Primary source
    TAIR:AT1G24610
    Locus tag
    AT1G24610
    See related
    Araport:AT1G24610
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    F21J9.27
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    Genomic context

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    Location:
    chromosome: 1
    Exon count:
    4
    Sequence:
    Chromosome: 1; NC_003070.9 (8720651..8722825, complement)

    Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene uncharacterized protein Neighboring gene DORNROSCHEN-like protein Neighboring gene uncharacterized protein Neighboring gene EF hand calcium-binding protein family Neighboring gene zinc finger protein 7

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003070.9

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Sorting signals, N-terminal modifications and abundance of the chloroplast proteome. Zybailov B, et al. PLoS One, 2008 Apr 23. PMID 18431481, Free PMC Article
    2. CrY2H-seq: a massively multiplexed assay for deep-coverage interactome mapping. Wanamaker SA, et al. Nat Methods, 2017 Aug. PMID 28650476, Free PMC Article
    3. Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana. Theologis A, et al. Nature, 2000 Dec 14. PMID 11130712

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    NM_102303.5

    Gene Ontology Provided by TAIR

    Component Evidence Code Pubs
    located_in chloroplast HDA PubMed 
    located_in chloroplast ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    Rubisco methyltransferase family protein
    NP_564222.1
    • Rubisco methyltransferase family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: SET domain (InterPro:IPR001214), Rubisco LSMT substrate-binding (InterPro:IPR015353); BEST Arabidopsis thaliana protein match is: plastid transcriptionally active 14 (TAIR:AT4G20130.1); Has 1056 Blast hits to 1053 proteins in 191 species: Archae - 0; Bacteria - 0; Metazoa - 237; Fungi - 281; Plants - 368; Viruses - 0; Other Eukaryotes - 170 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003070.9 Reference assembly

      Range
      8720651..8722825 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_102303.5 → NP_564222.1  Rubisco methyltransferase family protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_564222.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178WFN5, A0A5S9VUD6, Q9FYK3
      Conserved Domains (2) summary
      cd10527
      Location:50 → 296
      SET_LSMT; SET domain found in Rubisco large subunit methyltransferase (LSMT) and similar proteins
      pfam09273
      Location:332 → 453
      Rubis-subs-bind; Rubisco LSMT substrate-binding
    Nucleotide Protein
    Heading Accession and Version

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