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    AtkdsA1 Aldolase-type TIM barrel family protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 844288, updated on 18-Sep-2024

    Summary

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    Official Symbol
    AtkdsA1
    Official Full Name
    Aldolase-type TIM barrel family protein
    Primary source
    TAIR:AT1G79500
    Locus tag
    AT1G79500
    See related
    Araport:AT1G79500
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    3-Deoxy-D-manno-octulosonate 8-phosphate synthase; KDO8PS; T8K14.8; T8K14_8
    Summary
    Encodes a protein with 3-deoxy-8-phosphooctulonate synthase (KDOP synthase) activity which is involved in the biosynthesis of KDO, a component of cell wall rhamnogalacturonan II.
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    Genomic context

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    See AtkdsA1 in Genome Data Viewer
    Location:
    chromosome: 1
    Exon count:
    14
    Sequence:
    Chromosome: 1; NC_003070.9 (29903353..29906653)

    Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene Carbohydrate-binding X8 domain superfamily protein Neighboring gene uncharacterized protein Neighboring gene Pentatricopeptide repeat (PPR) superfamily protein Neighboring gene ncRNA Neighboring gene hypothetical protein (DUF2358) Neighboring gene ncRNA

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003070.9

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. The synthesis of the rhamnogalacturonan II component 3-deoxy-D-manno-2-octulosonic acid (Kdo) is required for pollen tube growth and elongation. Delmas F, et al. J Exp Bot, 2008. PMID 18503041, Free PMC Article
    2. Arabidopsis 3-deoxy-D-manno-oct-2-ulosonate-8-phosphate synthase: cDNA cloning and expression analyses. Matsuura K, et al. J Exp Bot, 2003 Jul. PMID 12754267
    3. Arabidopsis G-protein interactome reveals connections to cell wall carbohydrates and morphogenesis. Klopffleisch K, et al. Mol Syst Biol, 2011 Sep 27. PMID 21952135, Free PMC Article
    4. Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana. Theologis A, et al. Nature, 2000 Dec 14. PMID 11130712

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?
    1. Haploid pollens of the AtkdsA1 and AtkdsA2 double mutant can not form elongated pollen tube properly.
      Title: The synthesis of the rhamnogalacturonan II component 3-deoxy-D-manno-2-octulosonic acid (Kdo) is required for pollen tube growth and elongation.
    Submit: New GeneRIF Correction

    Pathways from PubChem

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    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    NM_001334882.1
    NM_001334883.1
    NM_001334884.1
    NM_106598.4

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables 3-deoxy-8-phosphooctulonate synthase activity IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in monosaccharide biosynthetic process IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    involved_in pollen tube development IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    involved_in pollen tube growth IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    acts_upstream_of_or_within rhamnogalacturonan II biosynthetic process TAS
    Traceable Author Statement
    more info
    		 PubMed 
    involved_in rhamnogalacturonan II biosynthetic process TAS
    Traceable Author Statement
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in cytoplasm ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    Aldolase-type TIM barrel family protein
    NP_001319413.1
    • AtkdsA1; FUNCTIONS IN: 3-deoxy-8-phosphooctulonate synthase activity; INVOLVED IN: metabolic process, rhamnogalacturonan II biosynthetic process; LOCATED IN: endomembrane system, cytoplasm; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: DAHP synthetase I/KDSA (InterPro:IPR006218), Aldolase-type TIM barrel (InterPro:IPR013785), 3-deoxy-8-phosphooctulonate synthase (InterPro:IPR006269); BEST Arabidopsis thaliana protein match is: Aldolase superfamily protein (TAIR:AT1G16340.3); Has 7925 Blast hits to 7923 proteins in 2056 species: Archae - 64; Bacteria - 5004; Metazoa - 4; Fungi - 0; Plants - 58; Viruses - 0; Other Eukaryotes - 2795 (source: NCBI BLink).
    NP_001319414.1
    • AtkdsA1; FUNCTIONS IN: 3-deoxy-8-phosphooctulonate synthase activity; INVOLVED IN: metabolic process, rhamnogalacturonan II biosynthetic process; LOCATED IN: endomembrane system, cytoplasm; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: DAHP synthetase I/KDSA (InterPro:IPR006218), Aldolase-type TIM barrel (InterPro:IPR013785), 3-deoxy-8-phosphooctulonate synthase (InterPro:IPR006269); BEST Arabidopsis thaliana protein match is: Aldolase superfamily protein (TAIR:AT1G16340.3); Has 7925 Blast hits to 7923 proteins in 2056 species: Archae - 64; Bacteria - 5004; Metazoa - 4; Fungi - 0; Plants - 58; Viruses - 0; Other Eukaryotes - 2795 (source: NCBI BLink).
    NP_001319415.1
    • AtkdsA1; FUNCTIONS IN: 3-deoxy-8-phosphooctulonate synthase activity; INVOLVED IN: metabolic process, rhamnogalacturonan II biosynthetic process; LOCATED IN: endomembrane system, cytoplasm; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: DAHP synthetase I/KDSA (InterPro:IPR006218), Aldolase-type TIM barrel (InterPro:IPR013785), 3-deoxy-8-phosphooctulonate synthase (InterPro:IPR006269); BEST Arabidopsis thaliana protein match is: Aldolase superfamily protein (TAIR:AT1G16340.3); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
    NP_178068.1
    • AtkdsA1; FUNCTIONS IN: 3-deoxy-8-phosphooctulonate synthase activity; INVOLVED IN: metabolic process, rhamnogalacturonan II biosynthetic process; LOCATED IN: endomembrane system, cytoplasm; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: DAHP synthetase I/KDSA (InterPro:IPR006218), Aldolase-type TIM barrel (InterPro:IPR013785), 3-deoxy-8-phosphooctulonate synthase (InterPro:IPR006269); BEST Arabidopsis thaliana protein match is: Aldolase superfamily protein (TAIR:AT1G16340.3); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003070.9 Reference assembly

      Range
      29903353..29906653
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_106598.4 → NP_178068.1  Aldolase-type TIM barrel family protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_178068.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      B9DG45, Q8L890, Q9AV97, Q9SAJ9
      UniProtKB/TrEMBL
      A0A178W4C4, A0A654EBD7
      Conserved Domains (1) summary
      PLN03033
      Location:1 → 290
      PLN03033; 2-dehydro-3-deoxyphosphooctonate aldolase; Provisional

    2. NM_001334884.1 → NP_001319415.1  Aldolase-type TIM barrel family protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      B9DG45, Q8L890, Q9AV97, Q9SAJ9
      UniProtKB/TrEMBL
      A0A178W4C4, A0A654EBD7
      Conserved Domains (1) summary
      PLN03033
      Location:1 → 290
      PLN03033; 2-dehydro-3-deoxyphosphooctonate aldolase; Provisional

    3. NM_001334883.1 → NP_001319414.1  Aldolase-type TIM barrel family protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      B9DG45, Q8L890, Q9AV97, Q9SAJ9
      UniProtKB/TrEMBL
      A0A178W4C4, A0A654EBD7
      Conserved Domains (1) summary
      PLN03033
      Location:1 → 290
      PLN03033; 2-dehydro-3-deoxyphosphooctonate aldolase; Provisional

    4. NM_001334882.1 → NP_001319413.1  Aldolase-type TIM barrel family protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      B9DG45, Q8L890, Q9AV97, Q9SAJ9
      UniProtKB/TrEMBL
      A0A178W4C4, A0A654EBD7
      Conserved Domains (1) summary
      PLN03033
      Location:1 → 290
      PLN03033; 2-dehydro-3-deoxyphosphooctonate aldolase; Provisional
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q9AV97.2

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