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    PSRP3/1 Ribosomal protein PSRP-3/Ycf65 [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 843189, updated on 18-Sep-2024

    Summary

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    Official Symbol
    PSRP3/1
    Official Full Name
    Ribosomal protein PSRP-3/Ycf65
    Primary source
    TAIR:AT1G68590
    Locus tag
    AT1G68590
    See related
    Araport:AT1G68590
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    F24J5.17; F24J5_17; plastid-specific ribosomal protein 3/1
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    Genomic context

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    See PSRP3/1 in Genome Data Viewer
    Location:
    chromosome: 1
    Exon count:
    2
    Sequence:
    Chromosome: 1; NC_003070.9 (25757404..25758411, complement)

    Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene ncRNA Neighboring gene Agenet and bromo-adjacent homology (BAH) domain-containing protein Neighboring gene uncharacterized protein Neighboring gene aluminum activated malate transporter family protein Neighboring gene PLANT CADMIUM RESISTANCE 11

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003070.9

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. The plastid-specific ribosomal proteins of Arabidopsis thaliana can be divided into non-essential proteins and genuine ribosomal proteins. Tiller N, et al. Plant J, 2012 Jan. PMID 21923745
    2. In-depth analysis of the thylakoid membrane proteome of Arabidopsis thaliana chloroplasts: new proteins, new functions, and a plastid proteome database. Friso G, et al. Plant Cell, 2004 Feb. PMID 14729914, Free PMC Article
    3. AT_CHLORO, a comprehensive chloroplast proteome database with subplastidial localization and curated information on envelope proteins. Ferro M, et al. Mol Cell Proteomics, 2010 Jun. PMID 20061580, Free PMC Article
    4. Extensive signal integration by the phytohormone protein network. Altmann M, et al. Nature, 2020 Jul. PMID 32612234
    5. Sorting signals, N-terminal modifications and abundance of the chloroplast proteome. Zybailov B, et al. PLoS One, 2008 Apr 23. PMID 18431481, Free PMC Article

    See all (9) citations in PubMed

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Homology

    NM_001084324.1
    NM_105531.4

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables protein binding IPI
    Inferred from Physical Interaction
    more info
    		 PubMed 
    enables structural constituent of ribosome IEA
    Inferred from Electronic Annotation
    more info
    		  
    Process Evidence Code Pubs
    acts_upstream_of_or_within plastid translation IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    involved_in translation IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    located_in chloroplast HDA PubMed 
    located_in chloroplast IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    located_in chloroplast ISM
    Inferred from Sequence Model
    more info
    		  
    located_in chloroplast stroma HDA PubMed 
    located_in chloroplast thylakoid membrane HDA PubMed 
    located_in mitochondrion HDA PubMed 
    located_in plastid IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    located_in thylakoid HDA PubMed 

    General protein information

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    Preferred Names
    Ribosomal protein PSRP-3/Ycf65
    NP_001077793.1
    • Ribosomal protein PSRP-3/Ycf65; FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translation; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein PSRP-3/Ycf65 (InterPro:IPR006924); BEST Arabidopsis thaliana protein match is: Ribosomal protein PSRP-3/Ycf65 (TAIR:AT5G15760.1); Has 392 Blast hits to 392 proteins in 108 species: Archae - 0; Bacteria - 133; Metazoa - 0; Fungi - 0; Plants - 76; Viruses - 0; Other Eukaryotes - 183 (source: NCBI BLink).
    NP_564934.1
    • Ribosomal protein PSRP-3/Ycf65; FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translation; LOCATED IN: thylakoid, chloroplast thylakoid membrane, chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein PSRP-3/Ycf65 (InterPro:IPR006924); BEST Arabidopsis thaliana protein match is: Ribosomal protein PSRP-3/Ycf65 (TAIR:AT5G15760.1); Has 390 Blast hits to 390 proteins in 107 species: Archae - 0; Bacteria - 131; Metazoa - 0; Fungi - 0; Plants - 76; Viruses - 0; Other Eukaryotes - 183 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003070.9 Reference assembly

      Range
      25757404..25758411 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_105531.4 → NP_564934.1  Ribosomal protein PSRP-3/Ycf65 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_564934.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q8LD87, Q9SX22
      UniProtKB/TrEMBL
      A0A178W6Q0, A0A5S9WQK6
      Conserved Domains (1) summary
      cl04793
      Location:78 → 162
      PSRP-3_Ycf65; Plastid and cyanobacterial ribosomal protein (PSRP-3 / Ycf65)

    2. NM_001084324.1 → NP_001077793.1  Ribosomal protein PSRP-3/Ycf65 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_001077793.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A8MQL0
      Conserved Domains (1) summary
      cl04793
      Location:73 → 159
      PSRP-3_Ycf65; Plastid and cyanobacterial ribosomal protein (PSRP-3 / Ycf65)
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q9SX22.1

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