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    RFL1 RPS5-like 1 [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 837774, updated on 18-Sep-2024

    Summary

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    Official Symbol
    RFL1
    Official Full Name
    RPS5-like 1
    Primary source
    TAIR:AT1G12210
    Locus tag
    AT1G12210
    See related
    Araport:AT1G12210
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    RPS5-like 1; T28K15.6; T28K15_6
    Summary
    RFL1 has high sequence similarity to the adjacent disease resistance (R) gene RPS5.
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    Genomic context

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    See RFL1 in Genome Data Viewer
    Location:
    chromosome: 1
    Exon count:
    2
    Sequence:
    Chromosome: 1; NC_003070.9 (4140216..4143916)

    Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene miscRNA Neighboring gene Flavin-binding monooxygenase family protein Neighboring gene uncharacterized protein Neighboring gene Disease resistance protein (CC-NBS-LRR class) family Neighboring gene Aldolase superfamily protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003070.9

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. A new Ac-like transposon of Arabidopsis is associated with a deletion of the RPS5 disease resistance gene. Henk AD, et al. Genetics, 1999 Apr. PMID 10101179, Free PMC Article
    2. Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana. Theologis A, et al. Nature, 2000 Dec 14. PMID 11130712

    GeneRIFs: Gene References Into Functions

    General gene information

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    NM_101093.2

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables ADP binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    Process Evidence Code Pubs
    acts_upstream_of_or_within response to bacterium ISS
    Inferred from Sequence or Structural Similarity
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    RPS5-like 1
    NP_172685.1
    • RPS5-like 1 (RFL1); FUNCTIONS IN: ATP binding; INVOLVED IN: N-terminal protein myristoylation, response to bacterium, defense response; LOCATED IN: cellular_component unknown; EXPRESSED IN: shoot apex, stem, embryo, sepal, stamen; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage, D bilateral stage; CONTAINS InterPro DOMAIN/s: NB-ARC (InterPro:IPR002182), Disease resistance protein (InterPro:IPR000767); BEST Arabidopsis thaliana protein match is: Disease resistance protein (CC-NBS-LRR class) family (TAIR:AT1G12220.2); Has 18050 Blast hits to 15832 proteins in 638 species: Archae - 19; Bacteria - 1098; Metazoa - 2850; Fungi - 219; Plants - 13503; Viruses - 0; Other Eukaryotes - 361 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003070.9 Reference assembly

      Range
      4140216..4143916
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001332021.1 → NP_001321385.1  RPS5-like 1 [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A1P8AQY6, A0A5S9TYN8

    2. NM_001332022.1 → NP_001321386.1  RPS5-like 1 [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A1P8AQY6, A0A5S9TYN8

    3. NM_101093.2 → NP_172685.1  RPS5-like 1 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_172685.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      O04667, O04669, O81401, Q8L3R3, Q8L3Y7, Q8L4E2, Q8LGP3, Q8LGP4, Q8LGP7, Q8LGP8, Q8LGP9, Q8LGQ0
      UniProtKB/TrEMBL
      A0A5S9TYN8
      Conserved Domains (3) summary
      sd00031
      Location:540 → 564
      LRR_1; leucine-rich repeat [structural motif]
      pfam00931
      Location:160 → 443
      NB-ARC; NB-ARC domain
      pfam13855
      Location:542 → 599
      LRR_8; Leucine rich repeat
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q8L3R3.2

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