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    PDCB4 plasmodesmata callose-binding protein 4 [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 843261, updated on 18-Sep-2024

    Summary

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    Official Symbol
    PDCB4
    Official Full Name
    plasmodesmata callose-binding protein 4
    Primary source
    TAIR:AT1G69295
    Locus tag
    AT1G69295
    See related
    Araport:AT1G69295
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    plasmodesmata callose-binding protein 4
    Summary
    Encodes a member of the X8-GPI family of proteins. It localizes to the plasmodesmata and is predicted to bind callose.
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    Genomic context

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    See PDCB4 in Genome Data Viewer
    Location:
    chromosome: 1
    Exon count:
    4
    Sequence:
    Chromosome: 1; NC_003070.9 (26050143..26052721, complement)

    Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene uncharacterized protein Neighboring gene Pentatricopeptide repeat (PPR) superfamily protein Neighboring gene tRNA-Asn Neighboring gene WRKY DNA-binding protein 57 Neighboring gene CLAVATA3/ESR-RELATED 10

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003070.9

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. An Arabidopsis GPI-anchor plasmodesmal neck protein with callose binding activity and potential to regulate cell-to-cell trafficking. Simpson C, et al. Plant Cell, 2009 Feb. PMID 19223515, Free PMC Article
    2. Identification of glycosylphosphatidylinositol-anchored proteins in Arabidopsis. A proteomic and genomic analysis. Borner GH, et al. Plant Physiol, 2003 Jun. PMID 12805588, Free PMC Article
    3. Prediction of glycosylphosphatidylinositol-anchored proteins in Arabidopsis. A genomic analysis. Borner GH, et al. Plant Physiol, 2002 Jun. PMID 12068095, Free PMC Article
    4. Global Analysis of Membrane-associated Protein Oligomerization Using Protein Correlation Profiling. McBride Z, et al. Mol Cell Proteomics, 2017 Nov. PMID 28887381, Free PMC Article
    5. Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana. Theologis A, et al. Nature, 2000 Dec 14. PMID 11130712

    GeneRIFs: Gene References Into Functions

    General gene information

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    NM_001334405.1
    NM_105597.3

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables (1->3)-beta-D-glucan binding ISS
    Inferred from Sequence or Structural Similarity
    more info
    		 PubMed 
    enables polysaccharide binding ISS
    Inferred from Sequence or Structural Similarity
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in extracellular region ISM
    Inferred from Sequence Model
    more info
    		  
    located_in membrane TAS
    Traceable Author Statement
    more info
    		 PubMed 
    located_in mitochondrion HDA PubMed 
    located_in plasmodesma IDA
    Inferred from Direct Assay
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    plasmodesmata callose-binding protein 4
    NP_564957.1
    • plasmodesmata callose-binding protein 4 (PDCB4); FUNCTIONS IN: callose binding, polysaccharide binding; INVOLVED IN: biological_process unknown; LOCATED IN: plasmodesma, plasma membrane, anchored to membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: X8 (InterPro:IPR012946); BEST Arabidopsis thaliana protein match is: Carbohydrate-binding X8 domain superfamily protein (TAIR:AT1G26450.1); Has 31696 Blast hits to 10907 proteins in 912 species: Archae - 149; Bacteria - 8998; Metazoa - 7905; Fungi - 3090; Plants - 1809; Viruses - 608; Other Eukaryotes - 9137 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003070.9 Reference assembly

      Range
      26050143..26052721 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_105597.3 → NP_564957.1  plasmodesmata callose-binding protein 4 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_564957.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q67ZF7, Q8GWY5, Q8LE41, Q93V72, Q9C982
      UniProtKB/TrEMBL
      A0A5S9WSW2, A0A654ENZ6
      Conserved Domains (1) summary
      smart00768
      Location:21 → 100
      X8; Possibly involved in carbohydrate binding

    2. NM_001334405.1 → NP_001322428.1  plasmodesmata callose-binding protein 4 [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A1P8AU10, A0A5S9WSW2, A0A654ENZ6
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q93V72.1

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