U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from GEO Profiles

    • Showing Current items.

    Transport protein particle (TRAPP) component [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 819661, updated on 18-Sep-2024

    Summary

    Go to the top of the page Help
    Official Full Name
    Transport protein particle (TRAPP) component
    Primary source
    TAIR:AT3G05000
    Locus tag
    AT3G05000
    See related
    Araport:AT3G05000
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    T9J14.5; T9J14_5
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    Location:
    chromosome: 3
    Exon count:
    4
    Sequence:
    Chromosome: 3; NC_003074.8 (1387175..1388831, complement)

    Chromosome 3 - NC_003074.8Genomic Context describing neighboring genes Neighboring gene DHHC-type zinc finger family protein Neighboring gene DNAJ heat shock N-terminal domain-containing protein Neighboring gene ncRNA Neighboring gene intracellular protein transporter Neighboring gene ncRNA Neighboring gene Protein of unknown function, transmembrane-40 Neighboring gene acyl carrier protein 1

    Genomic regions, transcripts, and products

    Go to the top of the page Help
    Genomic Sequence:
    NC_003074.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

    Go to the top of the pageHelp

    Related articles in PubMed

    1. An essential role for Arabidopsis Trs33 in cell growth and organization in plant apical meristems. Zhang J, et al. Plant Cell Rep, 2020 Mar. PMID 31828377
    2. TRIPP Is a Plant-Specific Component of the Arabidopsis TRAPPII Membrane Trafficking Complex with Important Roles in Plant Development. Garcia VJ, et al. Plant Cell, 2020 Jul. PMID 32371545, Free PMC Article
    3. Plant cytokinesis is orchestrated by the sequential action of the TRAPPII and exocyst tethering complexes. Rybak K, et al. Dev Cell, 2014 Jun 9. PMID 24882377
    4. A collection of Ds insertional mutants associated with defects in male gametophyte development and function in Arabidopsis thaliana. Boavida LC, et al. Genetics, 2009 Apr. PMID 19237690, Free PMC Article
    5. Extensive signal integration by the phytohormone protein network. Altmann M, et al. Nature, 2020 Jul. PMID 32612234

    See all (8) citations in PubMed

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?
    1. An essential role for Arabidopsis Trs33 in cell growth and organization in plant apical meristems.
      Title: An essential role for Arabidopsis Trs33 in cell growth and organization in plant apical meristems.
    Submit: New GeneRIF Correction

    Interactions

    Go to the top of the page Help
    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

    Go to the top of the page Help
    NM_111372.4

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables protein binding IPI
    Inferred from Physical Interaction
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in Golgi vesicle transport IEA
    Inferred from Electronic Annotation
    more info
    		  
    acts_upstream_of_or_within pollen tube development IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in Golgi apparatus ISM
    Inferred from Sequence Model
    more info
    		  
    part_of TRAPPII protein complex IPI
    Inferred from Physical Interaction
    more info
    		 PubMed 
    located_in cytosol HDA PubMed 

    General protein information

    Go to the top of the page Help
    Preferred Names
    Transport protein particle (TRAPP) component
    NP_187151.1
    • Transport protein particle (TRAPP) component; CONTAINS InterPro DOMAIN/s: Transport protein particle (TRAPP) component (InterPro:IPR007194); Has 457 Blast hits to 457 proteins in 189 species: Archae - 0; Bacteria - 0; Metazoa - 198; Fungi - 137; Plants - 66; Viruses - 0; Other Eukaryotes - 56 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003074.8 Reference assembly

      Range
      1387175..1388831 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_111372.4 → NP_187151.1  Transport protein particle (TRAPP) component [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_187151.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A7G2EMI5, Q9CAW4
      Conserved Domains (1) summary
      cd14944
      Location:6 → 172
      TRAPPC6A_Trs33; Trs33 subunit of the TRAPP complex
    Nucleotide Protein
    Heading Accession and Version

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

    Molecular Biology Databases
    Research Materials
    Tools