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    NHD1 sodium:hydrogen antiporter 1 [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 821483, updated on 18-Sep-2024

    Summary

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    Official Symbol
    NHD1
    Official Full Name
    sodium:hydrogen antiporter 1
    Primary source
    TAIR:AT3G19490
    Locus tag
    AT3G19490
    See related
    Araport:AT3G19490
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    ARABIDOPSIS THALIANA NA/H ANTIPORTER 1; ATNHD1; sodium:hydrogen antiporter 1
    Summary
    member of Na+/H+ antiporter-Putative family
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    Genomic context

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    See NHD1 in Genome Data Viewer
    Location:
    chromosome: 3
    Exon count:
    10
    Sequence:
    Chromosome: 3; NC_003074.8 (6754615..6758285, complement)

    Chromosome 3 - NC_003074.8Genomic Context describing neighboring genes Neighboring gene Reticulon family protein Neighboring gene F-box and associated interaction domains-containing protein Neighboring gene D-3-phosphoglycerate dehydrogenase Neighboring gene basic helix-loop-helix (bHLH) DNA-binding superfamily protein Neighboring gene complex 1 protein, LYR family protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003074.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Decreased capacity for sodium export out of Arabidopsis chloroplasts impairs salt tolerance, photosynthesis and plant performance. Müller M, et al. Plant J, 2014 May. PMID 24617758
    2. A plastidial sodium-dependent pyruvate transporter. Furumoto T, et al. Nature, 2011 Aug 24. PMID 21866161
    3. Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana. Salanoubat M, et al. Nature, 2000 Dec 14. PMID 11130713

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    NM_112836.4

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables antiporter activity IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    enables potassium:proton antiporter activity ISS
    Inferred from Sequence or Structural Similarity
    more info
    		  
    enables pyruvate transmembrane transporter activity IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    Process Evidence Code Pubs
    acts_upstream_of_or_within pyruvate transport IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    involved_in response to salt stress IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    involved_in sodium ion transport IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in chloroplast ISM
    Inferred from Sequence Model
    more info
    		  
    located_in chloroplast envelope IDA
    Inferred from Direct Assay
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    sodium:hydrogen antiporter 1
    NP_566638.1
    • sodium:hydrogen antiporter 1 (NHD1); FUNCTIONS IN: potassium:hydrogen antiporter activity, sodium:hydrogen antiporter activity; INVOLVED IN: sodium ion transport; LOCATED IN: integral to membrane, chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Na+/H+ antiporter NhaD-like (InterPro:IPR018390), Divalent ion symporter (InterPro:IPR004680); BEST Arabidopsis thaliana protein match is: Na+/H+ antiporter 2 (TAIR:AT1G49810.1); Has 2659 Blast hits to 2653 proteins in 794 species: Archae - 96; Bacteria - 1787; Metazoa - 39; Fungi - 48; Plants - 76; Viruses - 0; Other Eukaryotes - 613 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003074.8 Reference assembly

      Range
      6754615..6758285 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_112836.4 → NP_566638.1  sodium:hydrogen antiporter 1 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_566638.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q9LT68
      UniProtKB/TrEMBL
      A0A178VEW4, A0A5S9XDT3, A0A654FA04
      Conserved Domains (1) summary
      PLN00137
      Location:136 → 559
      PLN00137; NHAD transporter family protein; Provisional
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q9LT68.1

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