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    CFM3A CRM family member 3A [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 821881, updated on 18-Sep-2024

    Summary

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    Official Symbol
    CFM3A
    Official Full Name
    CRM family member 3A
    Primary source
    TAIR:AT3G23070
    Locus tag
    AT3G23070
    See related
    Araport:AT3G23070
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    ATCFM3A; CRM family member 3A
    Summary
    Encodes a CRM domain protein CFM3a, involved in group IIB intron splicing in chloroplasts.
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    Genomic context

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    See CFM3A in Genome Data Viewer
    Location:
    chromosome: 3
    Exon count:
    9
    Sequence:
    Chromosome: 3; NC_003074.8 (8203393..8207419)

    Chromosome 3 - NC_003074.8Genomic Context describing neighboring genes Neighboring gene indole-3-acetic acid 7 Neighboring gene RING/U-box superfamily protein Neighboring gene Polyketide cyclase/dehydrase and lipid transport superfamily protein Neighboring gene pseudo Neighboring gene TPX2 (targeting protein for Xklp2) protein family

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003074.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Two CRM protein subfamilies cooperate in the splicing of group IIB introns in chloroplasts. Asakura Y, et al. RNA, 2008 Nov. PMID 18799595, Free PMC Article
    2. Identification and characterization of nuclear pore complex components in Arabidopsis thaliana. Tamura K, et al. Plant Cell, 2010 Dec. PMID 21189294, Free PMC Article
    3. Sorting signals, N-terminal modifications and abundance of the chloroplast proteome. Zybailov B, et al. PLoS One, 2008 Apr 23. PMID 18431481, Free PMC Article
    4. Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana. Salanoubat M, et al. Nature, 2000 Dec 14. PMID 11130713

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    NM_113207.4

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables mRNA binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    Process Evidence Code Pubs
    acts_upstream_of_or_within Group II intron splicing IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    acts_upstream_of_or_within seed development IGI
    Inferred from Genetic Interaction
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in chloroplast HDA PubMed 
    located_in chloroplast ISM
    Inferred from Sequence Model
    more info
    		  
    located_in mitochondrion IDA
    Inferred from Direct Assay
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    CRM family member 3A
    NP_188947.2
    • CRM family member 3A (CFM3A); FUNCTIONS IN: RNA binding; INVOLVED IN: seed development, Group II intron splicing; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: RNA-binding, CRM domain (InterPro:IPR001890); BEST Arabidopsis thaliana protein match is: CRM family member 3B (TAIR:AT4G14510.1); Has 676 Blast hits to 606 proteins in 108 species: Archae - 3; Bacteria - 41; Metazoa - 114; Fungi - 55; Plants - 403; Viruses - 3; Other Eukaryotes - 57 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003074.8 Reference assembly

      Range
      8203393..8207419
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_113207.4 → NP_188947.2  CRM family member 3A [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_188947.2

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      F4J2U9, Q0WV92, Q9LS85
      UniProtKB/TrEMBL
      A0A654F9T3
      Conserved Domains (1) summary
      pfam01985
      Location:639 → 725
      CRS1_YhbY; CRS1 / YhbY (CRM) domain
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    F4J2U9.1

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