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    Cellulase (glycosyl hydrolase family 5) protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 822213, updated on 18-Sep-2024

    Summary

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    Official Full Name
    Cellulase (glycosyl hydrolase family 5) protein
    Primary source
    TAIR:AT3G26130
    Locus tag
    AT3G26130
    See related
    Araport:AT3G26130
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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    Genomic context

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    Location:
    chromosome: 3
    Exon count:
    3
    Sequence:
    Chromosome: 3; NC_003074.8 (9551789..9555667, complement)

    Chromosome 3 - NC_003074.8Genomic Context describing neighboring genes Neighboring gene terminal EAR1-like 1 Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene cytochrome P450, family 86, subfamily C, polypeptide 2 Neighboring gene 2-oxoglutarate/Fe(II)-dependent oxygenase family protein Neighboring gene ncRNA Neighboring gene miscRNA

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003074.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana. Salanoubat M, et al. Nature, 2000 Dec 14. PMID 11130713

    GeneRIFs: Gene References Into Functions

    General gene information

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    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables mannan endo-1,4-beta-mannosidase activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    located_in chloroplast ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    Cellulase (glycosyl hydrolase family 5) protein
    NP_189244.1
    • Cellulase (glycosyl hydrolase family 5) protein; FUNCTIONS IN: cation binding, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity; INVOLVED IN: carbohydrate metabolic process; LOCATED IN: endomembrane system; EXPRESSED IN: inflorescence meristem, male gametophyte, root, flower; EXPRESSED DURING: M germinated pollen stage, 4 anthesis; CONTAINS InterPro DOMAIN/s: Ricin B-related lectin (InterPro:IPR008997), Ricin B lectin (InterPro:IPR000772), Glycoside hydrolase, catalytic core (InterPro:IPR017853), Glycoside hydrolase, family 5 (InterPro:IPR001547), Glycoside hydrolase, subgroup, catalytic core (InterPro:IPR013781); BEST Arabidopsis thaliana protein match is: Cellulase (glycosyl hydrolase family 5) protein (TAIR:AT1G13130.1); Has 429 Blast hits to 420 proteins in 135 species: Archae - 0; Bacteria - 200; Metazoa - 0; Fungi - 95; Plants - 114; Viruses - 0; Other Eukaryotes - 20 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003074.8 Reference assembly

      Range
      9551789..9555667 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001338789.1 → NP_001327393.1  Cellulase (glycosyl hydrolase family 5) protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A7G2EPS1, Q9LTN0

    2. NM_001338790.1 → NP_001327394.1  Cellulase (glycosyl hydrolase family 5) protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A1I9LS67, A0A7G2EPS1

    3. NM_113520.1 → NP_189244.1  Cellulase (glycosyl hydrolase family 5) protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_189244.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A7G2EPS1, F4JBE4
      Conserved Domains (2) summary
      COG2730
      Location:1 → 367
      BglC; Aryl-phospho-beta-D-glucosidase BglC, GH1 family [Carbohydrate transport and metabolism]
      cl23725
      Location:61 → 343
      Glyco_hydro_1; Glycosyl hydrolase family 1
    Nucleotide Protein
    Heading Accession and Version

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