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    Pentatricopeptide repeat (PPR-like) superfamily protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 840033, updated on 18-Sep-2024

    Summary

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    Official Full Name
    Pentatricopeptide repeat (PPR-like) superfamily protein
    Primary source
    TAIR:AT1G31430
    Locus tag
    AT1G31430
    See related
    Araport:AT1G31430
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    T8E3.8; T8E3_8
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    Genomic context

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    Location:
    chromosome: 1
    Exon count:
    2
    Sequence:
    Chromosome: 1; NC_003070.9 (11253912..11255745, complement)

    Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene TRAF-like family protein Neighboring gene putrescine-binding periplasmic protein-like protein Neighboring gene Leucine-rich repeat protein kinase family protein Neighboring gene SH3 domain-containing protein Neighboring gene Eukaryotic aspartyl protease family protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003070.9

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana. Theologis A, et al. Nature, 2000 Dec 14. PMID 11130712

    GeneRIFs: Gene References Into Functions

    General gene information

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    NM_001332963.1
    NM_102882.2

    Gene Ontology Provided by TAIR

    Component Evidence Code Pubs
    located_in chloroplast ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    Pentatricopeptide repeat (PPR-like) superfamily protein
    NP_001319122.1
    • Pentatricopeptide repeat (PPR-like) superfamily protein; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: SLOW GROWTH 1 (TAIR:AT2G22410.1); Has 41733 Blast hits to 13930 proteins in 242 species: Archae - 0; Bacteria - 11; Metazoa - 58; Fungi - 74; Plants - 41075; Viruses - 0; Other Eukaryotes - 515 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003070.9 Reference assembly

      Range
      11253912..11255745 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001332963.1 → NP_001319122.1  Pentatricopeptide repeat (PPR-like) superfamily protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q9C866
      UniProtKB/TrEMBL
      A0A7G2DXE3

    2. NM_102882.2 → NP_174428.1  Pentatricopeptide repeat (PPR-like) superfamily protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_174428.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q9C866
      UniProtKB/TrEMBL
      A0A7G2DXE3
      Conserved Domains (7) summary
      COG0457
      Location:3 → 268
      TPR; Tetratricopeptide (TPR) repeat [General function prediction only]
      TIGR00756
      Location:186 → 217
      PPR; pentatricopeptide repeat domain (PPR motif)
      sd00004
      Location:347 → 374
      PPR; PPR repeat [structural motif]
      pfam01535
      Location:245 → 275
      PPR; PPR repeat
      pfam12854
      Location:420 → 443
      PPR_1; PPR repeat
      pfam13041
      Location:242 → 291
      PPR_2; PPR repeat family
      pfam14432
      Location:520 → 565
      DYW_deaminase; DYW family of nucleic acid deaminases
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q9C866.1

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