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    Beta-glucosidase, GBA2 type family protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 826597, updated on 18-Sep-2024

    Summary

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    Official Full Name
    Beta-glucosidase, GBA2 type family protein
    Primary source
    TAIR:AT4G10060
    Locus tag
    AT4G10060
    See related
    Araport:AT4G10060
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    F28M11.3
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    Genomic context

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    Location:
    chromosome: 4
    Exon count:
    20
    Sequence:
    Chromosome: 4; NC_003075.7 (6288821..6295402)

    Chromosome 4 - NC_003075.7Genomic Context describing neighboring genes Neighboring gene cytochrome c-2 Neighboring gene esterase/lipase/thioesterase family protein Neighboring gene KH domain-containing protein Neighboring gene uncharacterized protein Neighboring gene elongator protein 6

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003075.7

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. The Arabidopsis AtGCD3 protein is a glucosylceramidase that preferentially hydrolyzes long-acyl-chain glucosylceramides. Dai GY, et al. J Biol Chem, 2020 Jan 17. PMID 31819005, Free PMC Article
    2. The vegetative vacuole proteome of Arabidopsis thaliana reveals predicted and unexpected proteins. Carter C, et al. Plant Cell, 2004 Dec. PMID 15539469, Free PMC Article
    3. Sequence and analysis of chromosome 4 of the plant Arabidopsis thaliana. Mayer K, et al. Nature, 1999 Dec 16. PMID 10617198

    GeneRIFs: Gene References Into Functions

    General gene information

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    NM_001340650.1
    NM_117074.8

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables glucosylceramidase activity IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in carbohydrate metabolic process IEA
    Inferred from Electronic Annotation
    more info
    		  
    involved_in glucosylceramide catabolic process IEA
    Inferred from Electronic Annotation
    more info
    		  
    acts_upstream_of_or_within sphingolipid metabolic process IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in endoplasmic reticulum IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    located_in plant-type vacuole HDA PubMed 
    located_in plasma membrane IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    located_in plasma membrane ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    Beta-glucosidase, GBA2 type family protein
    NP_192744.6
    • Beta-glucosidase, GBA2 type family protein; FUNCTIONS IN: catalytic activity, glucosylceramidase activity; INVOLVED IN: glucosylceramide catabolic process, sphingolipid metabolic process; LOCATED IN: vacuole; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Glucosylceramidase (InterPro:IPR006775), Six-hairpin glycosidase-like (InterPro:IPR008928), Beta-glucosidase, GBA2 type (InterPro:IPR014551); BEST Arabidopsis thaliana protein match is: Beta-glucosidase, GBA2 type family protein (TAIR:AT1G33700.2); Has 794 Blast hits to 727 proteins in 173 species: Archae - 72; Bacteria - 219; Metazoa - 159; Fungi - 0; Plants - 261; Viruses - 0; Other Eukaryotes - 83 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003075.7 Reference assembly

      Range
      6288821..6295402
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_117074.8 → NP_192744.6  Beta-glucosidase, GBA2 type family protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_192744.6

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A5S9XRL0, F4JLJ2, Q8LPR0
      Conserved Domains (2) summary
      pfam04685
      Location:493 → 855
      DUF608; Protein of unknown function, DUF608
      pfam12215
      Location:99 → 403
      GBA2_N; beta-Glucocerebrosidase 2 N terminal

    2. NM_001340650.1 → NP_001329211.1  Beta-glucosidase, GBA2 type family protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A5S9XRL0, F4JLJ2, Q8LPR0
    Nucleotide Protein
    Heading Accession and Version

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