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    GH9C3 glycosyl hydrolase 9C3 [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 826706, updated on 18-Sep-2024

    Summary

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    Official Symbol
    GH9C3
    Official Full Name
    glycosyl hydrolase 9C3
    Primary source
    TAIR:AT4G11050
    Locus tag
    AT4G11050
    See related
    Araport:AT4G11050
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    AtGH9C3; glycosyl hydrolase 9C3; T22B4.30; T22B4_30
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    Genomic context

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    See GH9C3 in Genome Data Viewer
    Location:
    chromosome: 4
    Exon count:
    9
    Sequence:
    Chromosome: 4; NC_003075.7 (6747234..6751536, complement)

    Chromosome 4 - NC_003075.7Genomic Context describing neighboring genes Neighboring gene AMP-dependent synthetase and ligase family protein Neighboring gene Protein phosphatase 2C family protein Neighboring gene mitochondrially targeted single-stranded DNA binding protein Neighboring gene HMG (high mobility group) box protein Neighboring gene WRKY family transcription factor

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003075.7

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Sequence and analysis of chromosome 4 of the plant Arabidopsis thaliana. Mayer K, et al. Nature, 1999 Dec 16. PMID 10617198

    GeneRIFs: Gene References Into Functions

    General gene information

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    NM_001340700.1
    NM_001340701.1
    NM_117175.3

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables carbohydrate binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables cellulase activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    located_in extracellular region ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    glycosyl hydrolase 9C3
    NP_192843.2
    • glycosyl hydrolase 9C3 (GH9C3); FUNCTIONS IN: carbohydrate binding, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity; INVOLVED IN: carbohydrate metabolic process; LOCATED IN: endomembrane system, extracellular region; EXPRESSED IN: 7 plant structures; EXPRESSED DURING: 4 anthesis, E expanded cotyledon stage, D bilateral stage; CONTAINS InterPro DOMAIN/s: Six-hairpin glycosidase (InterPro:IPR012341), Carbohydrate-binding (InterPro:IPR008965), Glycoside hydrolase, family 9, active site (InterPro:IPR018221), Six-hairpin glycosidase-like (InterPro:IPR008928), Glycoside hydrolase, family 9 (InterPro:IPR001701), Carbohydrate binding domain CBM49 (InterPro:IPR019028); BEST Arabidopsis thaliana protein match is: glycosyl hydrolase 9C2 (TAIR:AT1G64390.1); Has 1895 Blast hits to 1880 proteins in 271 species: Archae - 2; Bacteria - 695; Metazoa - 181; Fungi - 19; Plants - 923; Viruses - 0; Other Eukaryotes - 75 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003075.7 Reference assembly

      Range
      6747234..6751536 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_117175.3 → NP_192843.2  glycosyl hydrolase 9C3 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_192843.2

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      O82513, Q8L7I0
      UniProtKB/TrEMBL
      A0A654FN08
      Conserved Domains (3) summary
      PLN02171
      Location:21 → 626
      PLN02171; endoglucanase
      pfam09478
      Location:534 → 612
      CBM49; Carbohydrate binding domain CBM49
      cl02959
      Location:26 → 489
      Glyco_hydro_9; Glycosyl hydrolase family 9

    2. NM_001340700.1 → NP_001328090.1  glycosyl hydrolase 9C3 [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A1P8B3K9, A0A654FN08

    3. NM_001340701.1 → NP_001328091.1  glycosyl hydrolase 9C3 [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A1P8B3L0, A0A654FN08, A0A7G2F2U2
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q8L7I0.1

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