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    transcription initiation factor IIA gamma chain / TFIIA-gamma (TFIIA-S) [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 828546, updated on 18-Sep-2024

    Summary

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    Official Full Name
    transcription initiation factor IIA gamma chain / TFIIA-gamma (TFIIA-S)
    Primary source
    TAIR:AT4G24440
    Locus tag
    AT4G24440
    See related
    Araport:AT4G24440
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    T22A6.270; T22A6_270
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    Genomic context

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    Location:
    chromosome: 4
    Exon count:
    4
    Sequence:
    Chromosome: 4; NC_003075.7 (12633180..12634784)

    Chromosome 4 - NC_003075.7Genomic Context describing neighboring genes Neighboring gene ncRNA Neighboring gene Rhamnogalacturonate lyase family protein Neighboring gene phosphoglucan, water dikinase Neighboring gene CRT (chloroquine-resistance transporter)-like transporter 2

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003075.7

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Characterization and functional analysis of Arabidopsis TFIIA reveal that the evolutionarily unconserved region of the large subunit has a transcription activation domain. Li YF, et al. Plant Mol Biol, 1999 Feb. PMID 10092179
    2. Identification and characterization of transcription factors regulating Arabidopsis HAK5. Hong JP, et al. Plant Cell Physiol, 2013 Sep. PMID 23825216
    3. Sequence and analysis of chromosome 4 of the plant Arabidopsis thaliana. Mayer K, et al. Nature, 1999 Dec 16. PMID 10617198

    GeneRIFs: Gene References Into Functions

    Pathways from PubChem

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    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Homology

    NM_118577.5
    NM_179103.3

    Gene Ontology Provided by TAIR

    Process Evidence Code Pubs
    involved_in transcription initiation at RNA polymerase II promoter IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  
    part_of transcription factor TFIIA complex IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

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    Preferred Names
    transcription initiation factor IIA gamma chain / TFIIA-gamma (TFIIA-S)
    NP_194175.1
    • transcription initiation factor IIA gamma chain / TFIIA-gamma (TFIIA-S); FUNCTIONS IN: RNA polymerase II transcription factor activity; INVOLVED IN: transcription initiation from RNA polymerase II promoter; LOCATED IN: transcription factor TFIIA complex; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Transcription initiation factor IIA, gamma subunit (InterPro:IPR003194), Transcription factor IIA, beta-barrel (InterPro:IPR009088), Transcription initiation factor IIA, gamma subunit, N-terminal (InterPro:IPR015872), Transcription initiation factor IIA, gamma subunit, C-terminal (InterPro:IPR015871), Transcription factor IIA, helical (InterPro:IPR009083); Has 550 Blast hits to 550 proteins in 192 species: Archae - 0; Bacteria - 0; Metazoa - 186; Fungi - 161; Plants - 188; Viruses - 0; Other Eukaryotes - 15 (source: NCBI BLink).
    NP_849434.1
    • transcription initiation factor IIA gamma chain / TFIIA-gamma (TFIIA-S); FUNCTIONS IN: RNA polymerase II transcription factor activity; INVOLVED IN: transcription initiation from RNA polymerase II promoter; LOCATED IN: transcription factor TFIIA complex; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Transcription initiation factor IIA, gamma subunit (InterPro:IPR003194), Transcription factor IIA, beta-barrel (InterPro:IPR009088), Transcription initiation factor IIA, gamma subunit, N-terminal (InterPro:IPR015872), Transcription initiation factor IIA, gamma subunit, C-terminal (InterPro:IPR015871), Transcription factor IIA, helical (InterPro:IPR009083); Has 553 Blast hits to 553 proteins in 192 species: Archae - 0; Bacteria - 0; Metazoa - 188; Fungi - 162; Plants - 188; Viruses - 0; Other Eukaryotes - 15 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003075.7 Reference assembly

      Range
      12633180..12634784
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_118577.5 → NP_194175.1  transcription initiation factor IIA gamma chain / TFIIA-gamma (TFIIA-S) [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_194175.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      O49348, Q39236
      UniProtKB/TrEMBL
      A0A178V305, A0A384K8P8, Q53YU1
      Conserved Domains (1) summary
      COG5123
      Location:4 → 103
      TOA2; Transcription initiation factor IIA, gamma subunit [Transcription]

    2. NM_179103.3 → NP_849434.1  transcription initiation factor IIA gamma chain / TFIIA-gamma (TFIIA-S) [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_849434.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      O49348, Q39236
      UniProtKB/TrEMBL
      A0A178V305, A0A384K8P8, Q53YU1
      Conserved Domains (1) summary
      COG5123
      Location:4 → 103
      TOA2; Transcription initiation factor IIA, gamma subunit [Transcription]
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q39236.2

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