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    ER membrane protein complex subunit-like protein (DUF2012) [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 829345, updated on 18-Sep-2024

    Summary

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    Official Full Name
    ER membrane protein complex subunit-like protein (DUF2012)
    Primary source
    TAIR:AT4G32130
    Locus tag
    AT4G32130
    See related
    Araport:AT4G32130
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    F10N7.60; F10N7_60
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    Genomic context

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    Location:
    chromosome: 4
    Exon count:
    7
    Sequence:
    Chromosome: 4; NC_003075.7 (15520025..15522695, complement)

    Chromosome 4 - NC_003075.7Genomic Context describing neighboring genes Neighboring gene Beta-1,3-N-Acetylglucosaminyltransferase family protein Neighboring gene Galactosyltransferase family protein Neighboring gene EamA-like transporter family Neighboring gene vesicle-associated membrane protein 711

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003075.7

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Mapping the Arabidopsis organelle proteome. Dunkley TP, et al. Proc Natl Acad Sci U S A, 2006 Apr 25. PMID 16618929, Free PMC Article
    2. Putative glycosyltransferases and other plant Golgi apparatus proteins are revealed by LOPIT proteomics. Nikolovski N, et al. Plant Physiol, 2012 Oct. PMID 22923678, Free PMC Article
    3. Global Analysis of Membrane-associated Protein Oligomerization Using Protein Correlation Profiling. McBride Z, et al. Mol Cell Proteomics, 2017 Nov. PMID 28887381, Free PMC Article
    4. Sequence and analysis of chromosome 4 of the plant Arabidopsis thaliana. Mayer K, et al. Nature, 1999 Dec 16. PMID 10617198

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    NM_119365.5

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables carbohydrate binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    located_in chloroplast ISM
    Inferred from Sequence Model
    more info
    		  
    located_in endoplasmic reticulum HDA PubMed 
    located_in plasma membrane HDA PubMed 

    General protein information

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    Preferred Names
    ER membrane protein complex subunit-like protein (DUF2012)
    NP_194940.2
    • FUNCTIONS IN: carbohydrate binding; INVOLVED IN: biological_process unknown; LOCATED IN: endoplasmic reticulum; EXPRESSED IN: male gametophyte, callus, pollen tube; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage; CONTAINS InterPro DOMAIN/s: Carbohydrate-binding-like fold (InterPro:IPR013784), Protein of unknown function DUF2012 (InterPro:IPR019008); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF2012) (TAIR:AT2G25310.1); Has 295 Blast hits to 295 proteins in 131 species: Archae - 0; Bacteria - 8; Metazoa - 141; Fungi - 68; Plants - 50; Viruses - 0; Other Eukaryotes - 28 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003075.7 Reference assembly

      Range
      15520025..15522695 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_119365.5 → NP_194940.2  ER membrane protein complex subunit-like protein (DUF2012) [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_194940.2

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      O49379, Q8VY97
      UniProtKB/TrEMBL
      A0A178UZC2, A0A5S9XXT8
      Conserved Domains (1) summary
      cl21470
      Location:55 → 153
      Peptidase_M14NE-CP-C_like; Peptidase associated domain: C-terminal domain of M14 N/E carboxypeptidase; putative folding, regulation, or interaction domain
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q8VY97.1

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