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    PERK5 Protein kinase superfamily protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 829595, updated on 18-Sep-2024

    Summary

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    Official Symbol
    PERK5
    Official Full Name
    Protein kinase superfamily protein
    Primary source
    TAIR:AT4G34440
    Locus tag
    AT4G34440
    See related
    Araport:AT4G34440
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    AtPERK5; proline-rich extensin-like receptor kinase 5; T4L20.20; T4L20_20
    Summary
    Encodes a member of the proline-rich extensin-like receptor kinase (PERK) family. This family consists of 15 predicted receptor kinases (PMID: 15653807).
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    Genomic context

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    See PERK5 in Genome Data Viewer
    Location:
    chromosome: 4
    Exon count:
    9
    Sequence:
    Chromosome: 4; NC_003075.7 (16465730..16469039)

    Chromosome 4 - NC_003075.7Genomic Context describing neighboring genes Neighboring gene P-loop containing nucleoside triphosphate hydrolases superfamily protein Neighboring gene DNA-binding family protein Neighboring gene ncRNA Neighboring gene coatomer gamma-2 subunit, putative / gamma-2 coat protein, putative / gamma-2 COP Neighboring gene GTP binding protein beta 1

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003075.7

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Proline-rich extensin-like receptor kinases PERK5 and PERK12 are involved in pollen tube growth. Borassi C, et al. FEBS Lett, 2021 Oct. PMID 34427925
    2. Members of the Plant CRK Superfamily Are Capable of Trans- and Autophosphorylation of Tyrosine Residues. Nemoto K, et al. J Biol Chem, 2015 Jul 3. PMID 25969537, Free PMC Article
    3. Autophosphorylation profiling of Arabidopsis protein kinases using the cell-free system. Nemoto K, et al. Phytochemistry, 2011 Jul. PMID 21477822
    4. Border control--a membrane-linked interactome of Arabidopsis. Jones AM, et al. Science, 2014 May 16. PMID 24833385
    5. Sequence and analysis of chromosome 4 of the plant Arabidopsis thaliana. Mayer K, et al. Nature, 1999 Dec 16. PMID 10617198

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Homology

    NM_001342284.1
    NM_119609.3

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables protein serine/threonine kinase activity HDA PubMed 
    Process Evidence Code Pubs
    acts_upstream_of_or_within protein autophosphorylation HDA PubMed 
    Component Evidence Code Pubs
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  
    located_in pollen tube IDA
    Inferred from Direct Assay
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    Protein kinase superfamily protein
    NP_001320136.1
    • Protein kinase superfamily protein; FUNCTIONS IN: protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: chloroplast; EXPRESSED IN: 9 plant structures; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis, C globular stage, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Protein kinase, catalytic domain (InterPro:IPR000719), Serine-threonine/tyrosine-protein kinase (InterPro:IPR001245), Protein kinase-like domain (InterPro:IPR011009), Serine/threonine-protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: Protein kinase superfamily protein (TAIR:AT3G18810.1); Has 266608 Blast hits to 189069 proteins in 5467 species: Archae - 408; Bacteria - 42950; Metazoa - 96053; Fungi - 34948; Plants - 48105; Viruses - 4555; Other Eukaryotes - 39589 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003075.7 Reference assembly

      Range
      16465730..16469039
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001342284.1 → NP_001320136.1  Protein kinase superfamily protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      O65672, Q8GX23
      UniProtKB/TrEMBL
      A0A178V2W8, A0A5S9XYK4, A0A654FVX3
      Conserved Domains (1) summary
      cl21453
      Location:318 → 587
      PKc_like; Protein Kinases, catalytic domain

    2. NM_119609.3 → NP_195170.2  Protein kinase superfamily protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_195170.2

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      O65672, Q8GX23
      UniProtKB/TrEMBL
      A0A178V2W8, A0A5S9XYK4, A0A654FVX3
      Conserved Domains (1) summary
      cl21453
      Location:318 → 587
      PKc_like; Protein Kinases, catalytic domain
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q8GX23.1

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