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    UPSTREAM OF FLC-like protein (DUF966) [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 823754, updated on 18-Sep-2024

    Summary

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    Official Full Name
    UPSTREAM OF FLC-like protein (DUF966)
    Primary source
    TAIR:AT3G46110
    Locus tag
    AT3G46110
    See related
    Araport:AT3G46110
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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    Genomic context

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    Location:
    chromosome: 3
    Exon count:
    3
    Sequence:
    Chromosome: 3; NC_003074.8 (16931991..16933909)

    Chromosome 3 - NC_003074.8Genomic Context describing neighboring genes Neighboring gene C2H2 and C2HC zinc fingers superfamily protein Neighboring gene Histidyl-tRNA synthetase 1 Neighboring gene purple acid phosphatase 19 Neighboring gene ncRNA

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003074.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Characterization the role of a UFC homolog, AtAuxRP3, in the regulation of Arabidopsis seedling growth and stress response. Shen L, et al. J Plant Physiol, 2019 Sep. PMID 31207460
    2. A SOSEKI-based coordinate system interprets global polarity cues in Arabidopsis. Yoshida S, et al. Nat Plants, 2019 Feb. PMID 30737509, Free PMC Article
    3. DIX Domain Polymerization Drives Assembly of Plant Cell Polarity Complexes. van Dop M, et al. Cell, 2020 Feb 6. PMID 32004461, Free PMC Article
    4. Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana. Salanoubat M, et al. Nature, 2000 Dec 14. PMID 11130713

    GeneRIFs: Gene References Into Functions

    General gene information

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    NM_114480.4
    NM_202660.2

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables protein binding IPI
    Inferred from Physical Interaction
    more info
    		 PubMed 
    enables protein homodimerization activity ISS
    Inferred from Sequence or Structural Similarity
    more info
    		  
    Process Evidence Code Pubs
    involved_in inflorescence development IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    involved_in plant organ morphogenesis IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    involved_in protein polymerization IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    involved_in regulation of auxin biosynthetic process IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    involved_in regulation of auxin mediated signaling pathway IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    involved_in regulation of cell division IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    involved_in regulation of leaf development IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    involved_in regulation of root morphogenesis IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    involved_in response to osmotic stress IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    involved_in response to salt IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    involved_in specification of plant organ axis polarity IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    UPSTREAM OF FLC-like protein (DUF966)
    NP_190197.2
    • LOCATED IN: plasma membrane; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF966 (InterPro:IPR010369), Uncharacterised conserved protein UCP031043 (InterPro:IPR021182); BEST Arabidopsis thaliana protein match is: Domain of unknown function (DUF966) (TAIR:AT5G59790.1); Has 195 Blast hits to 168 proteins in 15 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 195; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
    NP_974389.1
    • LOCATED IN: plasma membrane; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: Uncharacterised conserved protein UCP031043 (InterPro:IPR021182), Protein of unknown function DUF966 (InterPro:IPR010369); BEST Arabidopsis thaliana protein match is: Domain of unknown function (DUF966) (TAIR:AT5G59790.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003074.8 Reference assembly

      Range
      16931991..16933909
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001339234.1 → NP_001325459.1  UPSTREAM OF FLC-like protein (DUF966) [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178VC19, A0A1I9LLA9

    2. NM_202660.2 → NP_974389.1  UPSTREAM OF FLC-like protein (DUF966) [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_974389.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178VE20
      Conserved Domains (1) summary
      pfam06136
      Location:20 → 311
      DUF966; Domain of unknown function (DUF966)

    3. NM_114480.4 → NP_190197.2  UPSTREAM OF FLC-like protein (DUF966) [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_190197.2

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      F4J7X6, Q8GY65, Q9LX84
      UniProtKB/TrEMBL
      A0A178VC19, A0A654FI85
      Conserved Domains (1) summary
      pfam06136
      Location:20 → 313
      DUF966; Domain of unknown function (DUF966)
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q8GY65.1

    Gene LinkOut

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