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    CNGC16 cyclic nucleotide-gated channel 16 [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 823956, updated on 18-Sep-2024

    Summary

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    Official Symbol
    CNGC16
    Official Full Name
    cyclic nucleotide-gated channel 16
    Primary source
    TAIR:AT3G48010
    Locus tag
    AT3G48010
    See related
    Araport:AT3G48010
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    ATCNGC16; cyclic nucleotide-gated channel 16; CYCLIC NUCLEOTIDE-GATED CHANNEL 16
    Summary
    member of Cyclic nucleotide gated channel family
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    Genomic context

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    See CNGC16 in Genome Data Viewer
    Location:
    chromosome: 3
    Exon count:
    7
    Sequence:
    Chromosome: 3; NC_003074.8 (17721137..17724140, complement)

    Chromosome 3 - NC_003074.8Genomic Context describing neighboring genes Neighboring gene SUGAR-INSENSITIVE 3 Neighboring gene aldehyde dehydrogenase 2B4 Neighboring gene uncharacterized protein Neighboring gene hypoxia-responsive family protein / zinc finger (C3HC4-type RING finger) family protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003074.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. A comparison of heat-stress transcriptome changes between wild-type Arabidopsis pollen and a heat-sensitive mutant harboring a knockout of cyclic nucleotide-gated cation channel 16 (cngc16). Rahmati Ishka M, et al. BMC Genomics, 2018 Jul 24. PMID 30041596, Free PMC Article
    2. A cyclic nucleotide-gated channel (CNGC16) in pollen is critical for stress tolerance in pollen reproductive development. Tunc-Ozdemir M, et al. Plant Physiol, 2013 Feb. PMID 23370720, Free PMC Article
    3. Identification of ubiquitinated proteins in Arabidopsis. Manzano C, et al. Plant Mol Biol, 2008 Sep. PMID 18535787
    4. Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana. Salanoubat M, et al. Nature, 2000 Dec 14. PMID 11130713

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?
    1. results support a model in which heat stress-tolerance in pollen involves an extensive reprogramming of the transcriptome through a signaling pathway that is dependent on the function of a specific Cyclic Nucleotide-Gated cation Channel, CNGC16
      Title: A comparison of heat-stress transcriptome changes between wild-type Arabidopsis pollen and a heat-sensitive mutant harboring a knockout of cyclic nucleotide-gated cation channel 16 (cngc16).
    2. Data indicate that cngc16 mutant pollen have attenuated expression of several heat-stress response genes, including two heat shock transcription factor genes, HsfA2 and HsfB1.
      Title: A cyclic nucleotide-gated channel (CNGC16) in pollen is critical for stress tolerance in pollen reproductive development.
    Submit: New GeneRIF Correction

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    NM_114670.2

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables monoatomic ion channel activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    Process Evidence Code Pubs
    involved_in biological_process ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    located_in mitochondrion ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    cyclic nucleotide-gated channel 16
    NP_190384.1
    • cyclic nucleotide-gated channel 16 (CNGC16); FUNCTIONS IN: ion channel activity, cyclic nucleotide binding, calmodulin binding; INVOLVED IN: ion transport, transmembrane transport; LOCATED IN: membrane; EXPRESSED IN: male gametophyte, flower, pollen tube; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis; CONTAINS InterPro DOMAIN/s: Cyclic nucleotide-binding (InterPro:IPR000595), Ion transport (InterPro:IPR005821), Cyclic nucleotide-binding-like (InterPro:IPR018490), RmlC-like jelly roll fold (InterPro:IPR014710); BEST Arabidopsis thaliana protein match is: cyclic nucleotide-gated channel 18 (TAIR:AT5G14870.1); Has 3330 Blast hits to 3084 proteins in 251 species: Archae - 0; Bacteria - 33; Metazoa - 1612; Fungi - 37; Plants - 1021; Viruses - 0; Other Eukaryotes - 627 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003074.8 Reference assembly

      Range
      17721137..17724140 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_114670.2 → NP_190384.1  cyclic nucleotide-gated channel 16 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_190384.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q1PEH4, Q9SU64
      UniProtKB/TrEMBL
      A0A7G2ES57
      Conserved Domains (3) summary
      COG0664
      Location:451 → 586
      Crp; cAMP-binding domain of CRP or a regulatory subunit of cAMP-dependent protein kinases [Signal transduction mechanisms]
      cd00038
      Location:457 → 588
      CAP_ED; effector domain of the CAP family of transcription factors; members include CAP (or cAMP receptor protein (CRP)), which binds cAMP, FNR (fumarate and nitrate reduction), which uses an iron-sulfur cluster to sense oxygen) and CooA, a heme containing CO ...
      pfam00520
      Location:94 → 386
      Ion_trans; Ion transport protein
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q9SU64.1

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