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    RD21B Granulin repeat cysteine protease family protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 834321, updated on 18-Sep-2024

    Summary

    Official Symbol
    RD21B
    Official Full Name
    Granulin repeat cysteine protease family protein
    Primary source
    TAIR:AT5G43060
    Locus tag
    AT5G43060
    See related
    Araport:AT5G43060
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    esponsive to dehydration 21B; MMG4.7; MMG4_7
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    Genomic context

    See RD21B in Genome Data Viewer
    Location:
    chromosome: 5
    Exon count:
    5
    Sequence:
    Chromosome: 5; NC_003076.8 (17269310..17272298, complement)

    Chromosome 5 - NC_003076.8Genomic Context describing neighboring genes Neighboring gene Cysteine/Histidine-rich C1 domain family protein Neighboring gene YCF20-like protein (DUF565) Neighboring gene pseudo Neighboring gene uncharacterized protein Neighboring gene ncRNA

    Interactions

    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

    NM_123672.4

    Gene Ontology Provided by TAIR

    General protein information

    Preferred Names
    Granulin repeat cysteine protease family protein
    NP_568620.1
    • Granulin repeat cysteine protease family protein; FUNCTIONS IN: cysteine-type peptidase activity, cysteine-type endopeptidase activity; INVOLVED IN: response to salt stress; LOCATED IN: vacuole; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Peptidase C1A, papain (InterPro:IPR013128), Proteinase inhibitor I29, cathepsin propeptide (InterPro:IPR013201), Granulin (InterPro:IPR000118), Peptidase C1A, papain C-terminal (InterPro:IPR000668), Peptidase, cysteine peptidase active site (InterPro:IPR000169); BEST Arabidopsis thaliana protein match is: Granulin repeat cysteine protease family protein (TAIR:AT1G47128.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003076.8 Reference assembly

      Range
      17269310..17272298 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_123672.4 → NP_568620.1  Granulin repeat cysteine protease family protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_568620.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q0WM94, Q9FMH8
      UniProtKB/TrEMBL
      A0A178US02, A0A5S9YB17
      Conserved Domains (3) summary
      smart00277
      Location:377 → 433
      GRAN; Granulin
      smart00848
      Location:50 → 109
      Inhibitor_I29; Cathepsin propeptide inhibitor domain (I29)
      pfam00112
      Location:138 → 353
      Peptidase_C1; Papain family cysteine protease
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