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    LEM3 (ligand-effect modulator 3) family protein / CDC50 family protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 834657, updated on 18-Sep-2024

    Summary

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    Official Full Name
    LEM3 (ligand-effect modulator 3) family protein / CDC50 family protein
    Primary source
    TAIR:AT5G46150
    Locus tag
    AT5G46150
    See related
    Araport:AT5G46150
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    MCL19.21; MCL19_21
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    Genomic context

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    Location:
    chromosome: 5
    Exon count:
    8
    Sequence:
    Chromosome: 5; NC_003076.8 (18707546..18710722, complement)

    Chromosome 5 - NC_003076.8Genomic Context describing neighboring genes Neighboring gene hypothetical protein (DUF295) Neighboring gene hypothetical protein (DUF295) Neighboring gene Ribosomal protein L14p/L23e family protein Neighboring gene F-box family protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003076.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana. Tabata S, et al. Nature, 2000 Dec 14. PMID 11130714

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    NM_001344659.1
    NM_001344660.1
    NM_123984.4
    NM_180808.2

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    located_in mitochondrion ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    LEM3 (ligand-effect modulator 3) family protein / CDC50 family protein
    NP_568657.1
    • LEM3 (ligand-effect modulator 3) family protein / CDC50 family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF284, transmembrane eukaryotic (InterPro:IPR005045); BEST Arabidopsis thaliana protein match is: ALA-interacting subunit 1 (TAIR:AT3G12740.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
    NP_851139.1
    • LEM3 (ligand-effect modulator 3) family protein / CDC50 family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF284, transmembrane eukaryotic (InterPro:IPR005045); BEST Arabidopsis thaliana protein match is: ALA-interacting subunit 1 (TAIR:AT3G12740.1); Has 857 Blast hits to 857 proteins in 216 species: Archae - 0; Bacteria - 0; Metazoa - 252; Fungi - 234; Plants - 162; Viruses - 0; Other Eukaryotes - 209 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003076.8 Reference assembly

      Range
      18707546..18710722 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_123984.4 → NP_568657.1  LEM3 (ligand-effect modulator 3) family protein / CDC50 family protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_568657.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q0WQT3, Q67YS6, Q67YX0, Q8LDM0, Q9FNK7
      UniProtKB/TrEMBL
      A0A178UKV9, A0A5S9YBF8, A0A654G903
      Conserved Domains (1) summary
      pfam03381
      Location:67 → 307
      CDC50; LEM3 (ligand-effect modulator 3) family / CDC50 family

    2. NM_180808.2 → NP_851139.1  LEM3 (ligand-effect modulator 3) family protein / CDC50 family protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_851139.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q0WQT3, Q67YS6, Q67YX0, Q8LDM0, Q9FNK7
      UniProtKB/TrEMBL
      A0A178UKV9, A0A5S9YBF8, A0A654G903
      Conserved Domains (1) summary
      pfam03381
      Location:67 → 307
      CDC50; LEM3 (ligand-effect modulator 3) family / CDC50 family

    3. NM_001344659.1 → NP_001330145.1  LEM3 (ligand-effect modulator 3) family protein / CDC50 family protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A1P8B9V8, A0A654G903

    4. NM_001344660.1 → NP_001330146.1  LEM3 (ligand-effect modulator 3) family protein / CDC50 family protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A1P8B9W3
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q67YS6.1

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