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    VPS60.2 SNF7 family protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 830364, updated on 18-Sep-2024

    Summary

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    Official Symbol
    VPS60.2
    Official Full Name
    SNF7 family protein
    Primary source
    TAIR:AT5G04850
    Locus tag
    AT5G04850
    See related
    Araport:AT5G04850
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    MUK11.17; MUK11_17
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    Genomic context

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    See VPS60.2 in Genome Data Viewer
    Location:
    chromosome: 5
    Exon count:
    7
    Sequence:
    Chromosome: 5; NC_003076.8 (1407940..1409935, complement)

    Chromosome 5 - NC_003076.8Genomic Context describing neighboring genes Neighboring gene ovate family protein 13 Neighboring gene Nuclear transport factor 2 (NTF2) family protein Neighboring gene bZIP protein Neighboring gene uncharacterized protein Neighboring gene splicing factor 3A subunit

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003076.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Protein-Protein Interaction Network and Subcellular Localization of the Arabidopsis Thaliana ESCRT Machinery. Richardson LG, et al. Front Plant Sci, 2011. PMID 22639582, Free PMC Article
    2. Exploring the ESCRTing machinery in eukaryotes. Winter V, et al. Trends Plant Sci, 2006 Mar. PMID 16488176, Free PMC Article
    3. Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana. Tabata S, et al. Nature, 2000 Dec 14. PMID 11130714

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Homology

    NM_001203299.1

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Process Evidence Code Pubs
    involved_in vacuolar transport IEA
    Inferred from Electronic Annotation
    more info
    		  
    acts_upstream_of_or_within vesicle-mediated transport ISS
    Inferred from Sequence or Structural Similarity
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in cytoplasm ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    SNF7 family protein
    NP_001190228.1
    • VPS60.2; CONTAINS InterPro DOMAIN/s: Snf7 (InterPro:IPR005024); BEST Arabidopsis thaliana protein match is: SNF7 family protein (TAIR:AT3G10640.1).
    NP_568143.1
    • VPS60.2; CONTAINS InterPro DOMAIN/s: Snf7 (InterPro:IPR005024); BEST Arabidopsis thaliana protein match is: SNF7 family protein (TAIR:AT3G10640.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003076.8 Reference assembly

      Range
      1407940..1409935 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_120567.3 → NP_568143.1  SNF7 family protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_568143.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q8L964, Q9FMC5
      UniProtKB/TrEMBL
      A0A178UDK9, A0A5S9Y1P6, A0A654FYS6
      Conserved Domains (1) summary
      cl21588
      Location:1 → 182
      Snf7

    2. NM_001203299.1 → NP_001190228.1  SNF7 family protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_001190228.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A654FYS6, F4JXR3
      Conserved Domains (1) summary
      cl21588
      Location:1 → 219
      Snf7; Snf7
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q9FMC5.1

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