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    Ribosomal L27e protein family [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 827159, updated on 18-Sep-2024

    Summary

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    Official Full Name
    Ribosomal L27e protein family
    Primary source
    TAIR:AT4G15000
    Locus tag
    AT4G15000
    See related
    Araport:AT4G15000
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    DL3545W; FCAALL.99
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    Genomic context

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    Location:
    chromosome: 4
    Exon count:
    1
    Sequence:
    Chromosome: 4; NC_003075.7 (8571816..8572681)

    Chromosome 4 - NC_003075.7Genomic Context describing neighboring genes Neighboring gene Cysteine/Histidine-rich C1 domain family protein Neighboring gene Topoisomerase II-associated protein PAT1 Neighboring gene Mitochondrial substrate carrier family protein Neighboring gene hAT transposon superfamily Neighboring gene uncharacterized protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003075.7

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Arabidopsis scaffold protein RACK1A interacts with diverse environmental stress and photosynthesis related proteins. Kundu N, et al. Plant Signal Behav, 2013 May. PMID 23435172, Free PMC Article
    2. Proteomic characterization of evolutionarily conserved and variable proteins of Arabidopsis cytosolic ribosomes. Chang IF, et al. Plant Physiol, 2005 Mar. PMID 15734919, Free PMC Article
    3. Identification and dynamics of Arabidopsis adaptor protein-2 complex and its involvement in floral organ development. Yamaoka S, et al. Plant Cell, 2013 Aug. PMID 23975897, Free PMC Article
    4. Analysis of the Arabidopsis cytosolic ribosome proteome provides detailed insights into its components and their post-translational modification. Carroll AJ, et al. Mol Cell Proteomics, 2008 Feb. PMID 17934214
    5. Isolation and identification of ubiquitin-related proteins from Arabidopsis seedlings. Igawa T, et al. J Exp Bot, 2009. PMID 19429840, Free PMC Article

    See all (11) citations in PubMed

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Homology

    NM_001084923.1
    NM_117587.3

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables mRNA binding IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    enables structural constituent of ribosome IEA
    Inferred from Electronic Annotation
    more info
    		  
    Process Evidence Code Pubs
    involved_in translation IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    located_in cytoplasm ISM
    Inferred from Sequence Model
    more info
    		  
    located_in cytosol HDA PubMed 
    NOT located_in cytosol RCA
    inferred from Reviewed Computational Analysis
    more info
    		 PubMed 
    part_of cytosolic large ribosomal subunit HDA PubMed 
    located_in cytosolic ribosome HDA PubMed 

    General protein information

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    Preferred Names
    Ribosomal L27e protein family
    NP_001078392.1
    • Ribosomal L27e protein family; FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translation; LOCATED IN: ribosome, cytosolic large ribosomal subunit, intracellular; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein L27e (InterPro:IPR001141); BEST Arabidopsis thaliana protein match is: Ribosomal L27e protein family (TAIR:AT3G22230.1); Has 763 Blast hits to 763 proteins in 288 species: Archae - 0; Bacteria - 0; Metazoa - 339; Fungi - 144; Plants - 139; Viruses - 0; Other Eukaryotes - 141 (source: NCBI BLink).
    NP_193236.1
    • Ribosomal L27e protein family; FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translation; LOCATED IN: cytosolic ribosome, ribosome, cytosolic large ribosomal subunit, intracellular; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein L27e, conserved site (InterPro:IPR018262), Ribosomal protein L27e (InterPro:IPR001141); BEST Arabidopsis thaliana protein match is: Ribosomal L27e protein family (TAIR:AT3G22230.1); Has 764 Blast hits to 764 proteins in 292 species: Archae - 0; Bacteria - 0; Metazoa - 341; Fungi - 149; Plants - 139; Viruses - 0; Other Eukaryotes - 135 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003075.7 Reference assembly

      Range
      8571816..8572681
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_117587.3 → NP_193236.1  Ribosomal L27e protein family [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_193236.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      O23354, P51419
      UniProtKB/TrEMBL
      A0A178UUT2, A0A384KZP3, Q0WRB8
      Conserved Domains (1) summary
      cl00354
      Location:1 → 135
      KOW; an acronym for the authors' surnames (Kyrpides, Ouzounis and Woese)

    2. NM_001084923.1 → NP_001078392.1  Ribosomal L27e protein family [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_001078392.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A7G2F0E7, A8MS28
      Conserved Domains (1) summary
      cd06090
      Location:6 → 88
      KOW_RPL27; KOW motif of eukaryotic Ribosomal Protein L27
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    P51419.2

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