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    hypothetical protein (DUF1639) [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 841980, updated on 18-Sep-2024

    Summary

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    Official Full Name
    hypothetical protein (DUF1639)
    Primary source
    TAIR:AT1G55340
    Locus tag
    AT1G55340
    See related
    Araport:AT1G55340
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    F7A10.13; F7A10_13
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    Genomic context

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    Location:
    chromosome: 1
    Exon count:
    6
    Sequence:
    Chromosome: 1; NC_003070.9 (20651814..20653764)

    Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene RNA polymerase II transcription mediator Neighboring gene uncharacterized protein Neighboring gene arabinogalactan protein 21 Neighboring gene calpain-type cysteine protease family Neighboring gene tRNA-splicing ligase (DUF239) Neighboring gene uncharacterized protein Neighboring gene NDH-dependent cyclic electron flow 5

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003070.9

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana. Theologis A, et al. Nature, 2000 Dec 14. PMID 11130712

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    NM_001160957.2
    NM_104410.3

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    hypothetical protein (DUF1639)
    NP_001154429.1
    • Protein of unknown function (DUF1639); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1639 (InterPro:IPR012438); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF1639) (TAIR:AT3G03880.1); Has 250 Blast hits to 247 proteins in 15 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 250; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
    NP_175931.2
    • Protein of unknown function (DUF1639); CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1639 (InterPro:IPR012438); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF1639) (TAIR:AT3G03880.1); Has 249 Blast hits to 246 proteins in 15 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 249; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003070.9 Reference assembly

      Range
      20651814..20653764
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_104410.3 → NP_175931.2  hypothetical protein (DUF1639) [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_175931.2

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178WFV2, Q6NKU3
      Conserved Domains (1) summary
      pfam07797
      Location:130 → 179
      DUF1639; Protein of unknown function (DUF1639)

    2. NM_001160957.2 → NP_001154429.1  hypothetical protein (DUF1639) [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_001154429.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      F4I099
      Conserved Domains (1) summary
      pfam07797
      Location:120 → 169
      DUF1639; Protein of unknown function (DUF1639)
    Nucleotide Protein
    Heading Accession and Version

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